RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CEP57Q86XR8 500 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ZNF354CQ86Y25 554 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CRLF3Q8IUI8 442 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NUDCD3Q8IVD9 361 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NDUFAF2Q8N183 169 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NKAPQ8N5F7 415 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 DNAJC5GQ8N7S2 189 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ENDOVQ8N8Q3 282 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 TRPV1Q8NER1 839 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NDRG1Q92597 394 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 ATP2A3Q93084 1043 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MYLPFQ96A32 169 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CERS2Q96G23 380 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PCED1BQ96HM7 432 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MOGAT1Q96PD6 335 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 TSGA13Q96PP4 275 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PPP1R2P1Q96PQ5 205 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 GAD1Q99259 594 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PKMYT1Q99640 499 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CPNE1Q99829 537 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 RTP3Q9BQQ7 232 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ACBD6Q9BR61 282 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 BTBD10Q9BSF8 475 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 C1QTNF7Q9BXJ2 289 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MMADHCQ9H3L0 296 aaPredicted RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 FAM96AQ9H5X1 160 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 LRRC40Q9H9A6 602 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 RNPEPL1Q9HAU8 725 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 SARS2Q9NP81 518 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 XPNPEP3Q9NQH7 507 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 THAP1Q9NVV9 213 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 DDIT4Q9NX09 232 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 KLHL8Q9P2G9 620 aaPredicted RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 HEY2Q9UBP5 337 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 SERGEFQ9UGK8 458 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 DCDC2Q9UHG0 476 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 EMCNQ9ULC0 261 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 STK38LQ9Y2H1 464 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 C15orf41Q9Y2V0 281 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 VWA8A3KMH1 1905 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CHD5Q8TDI0 1954 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 SYNJ2BP-COX16A0A087WUM0 186 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM237BA0A1B0GVD1 139 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 MAGEB16A2A368 324 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM72CH0Y354 149 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TPP1O14773 563 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TNPO2O14787 897 aaKnown RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 PPM1DO15297 605 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TIMM44O43615 452 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 ANP32DO95626 131 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CHRNA1P02708 482 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 SERPINE1P05121 402 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 SERPINA6P08185 405 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CELA2AP08217 269 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FGF3P11487 239 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 MYL4P12829 197 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 JUPP14923 745 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TYMPP19971 482 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 DNAJB1P25685 340 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 EPHB2P29323 1055 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 HOXC13P31276 330 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 SPRP35270 261 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 MAP2K2P36507 400 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 HADHAP40939 763 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 ALDH9A1P49189 494 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CSRP3P50461 194 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CDK7P50613 346 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 LIMK2P53671 638 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 KRTAP10-11P60412 298 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TFF2Q03403 129 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 EIF2B5Q13144 721 aaKnown RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 STX3Q13277 289 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 PDE1CQ14123 709 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 PCLAFQ15004 111 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 E2F5Q15329 346 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 GPR162Q16538 588 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CCDC153Q494R4 210 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FASTKD1Q53R41 847 aaKnown RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 CMPK2Q5EBM0 449 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 BRMS1LQ5PSV4 323 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM182AQ5T1J6 154 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 N4BP2L1Q5TBK1 243 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM72AQ5TYM5 149 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 MANEALQ5VSG8 457 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CST9Q5W186 159 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CES4AQ5XG92 561 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM72DQ6L9T8 149 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CASC4Q6P4E1 433 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 DCLRE1AQ6PJP8 1040 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 CD300LGQ6UXG3 332 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 C4orf50Q6ZRC1 276 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 PID1Q7Z2X4 250 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 C1QL2Q7Z5L3 287 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 TAC4Q86UU9 113 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 LCA5Q86VQ0 697 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 FAM72BQ86X60 149 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 METTL23Q86XA0 190 aa4.78□□□□□ -1.64
USP48-202ENST00000374730 ARID3BQ8IVW6 561 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 CCDC117Q8IWD4 279 aaPredicted RBP4.78□□□□□ -1.64
USP48-202ENST00000374730 ARHGAP24Q8N264 748 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms