RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SLC30A9Q6PML9 568 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 FRMD7Q6ZUT3 714 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 LSMEM2Q8N112 164 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 OR5AR1Q8NGP9 310 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 C12orf66Q96MD2 445 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 C7orf26Q96N11 449 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 SORT1Q99523 831 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 TMEM79Q9BSE2 394 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 C1QTNF3Q9BXJ4 246 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 ZSCAN32Q9NX65 697 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 CIDEBQ9UHD4 219 aa19.38■□□□□ 0.69
CLN3-205ENST00000359984 EML2O95834 649 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 JUNDP17535 347 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 HSPA7P48741 367 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 ILF3Q12906 894 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-205ENST00000359984 ANGPT1Q15389 498 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 ZXDCQ2QGD7 858 aaPredicted RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 ANKS6Q68DC2 871 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 FBXL8Q96CD0 374 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CCDC138Q96M89 665 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 NSUN5Q96P11 429 aaKnown RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 CCT8L2Q96SF2 557 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 PKP4Q99569 1192 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 WWOXQ9NZC7 414 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 SCHIP1Q9P0W5 487 aaPredicted RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 TNPO3Q9Y5L0 923 aaKnown RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 HSPA4LO95757 839 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 FAM107AO95990 144 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CSF2P04141 144 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CELA2BP08218 269 aaPredicted RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 CNR2P34972 360 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 SERPINB5P36952 375 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CDH13P55290 713 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 PCBP2Q15366 365 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-205ENST00000359984 DUS1LQ6P1R4 473 aaKnown RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 ABRAXAS1Q6UWZ7 409 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 WASH2PQ6VEQ5 465 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CEP68Q76N32 757 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 CPLX4Q7Z7G2 160 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 UBTD2Q8WUN7 234 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 ZC3H10Q96K80 434 aaKnown RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 WASH6PQ9NQA3 447 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 TMEM74BQ9NUR3 256 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 APOBEC3BQ9UH17 382 aaKnown RBP19.37■□□□□ 0.69
CLN3-205ENST00000359984 PCTPQ9UKL6 214 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 PCOLCE2Q9UKZ9 415 aa19.37■□□□□ 0.69
CLN3-205ENST00000359984 SDK1Q7Z5N4 2213 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 MYO1CO00159 1063 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 E2F3O00716 465 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 NDUFAB1O14561 156 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 CTSEP14091 401 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 TSPAN8P19075 237 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 GGT5P36269 586 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 GDF5P43026 501 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 HNMTP50135 292 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 C21orf59P57076 290 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 RPE65Q16518 533 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 CGB2Q6NT52 195 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 TCAIMQ8N3R3 496 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 ZBTB44Q8NCP5 570 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 OR5K2Q8NHB8 316 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 PPP4R1Q8TF05 950 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 ZNF483Q8TF39 744 aaPredicted RBP19.36■□□□□ 0.69
CLN3-205ENST00000359984 ZNF473Q8WTR7 871 aaKnown RBP19.36■□□□□ 0.69
CLN3-205ENST00000359984 SKA1Q96BD8 255 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 GSDMCQ9BYG8 508 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 CD244Q9BZW8 370 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 C11orf16Q9NQ32 467 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 KNL1Q8NG31 2342 aa19.36■□□□□ 0.69
CLN3-205ENST00000359984 ZFC3H1O60293 1989 aaKnown RBP19.36■□□□□ 0.69
CLN3-205ENST00000359984 SPAG17Q6Q759 2223 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 A0A1B0GTW7 788 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 A0A1B0GVT2 93 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 A6NCN8 305 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 OR52A4PA6NMU1 304 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 NME1P15531 152 aaKnown RBP19.35■□□□□ 0.69
CLN3-205ENST00000359984 PRKG2Q13237 762 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 C1orf61Q13536 156 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 GRB7Q14451 532 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 PRRT3Q5FWE3 981 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 TTC23LQ6PF05 361 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 DCUN1D3Q8IWE4 304 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 OR9A1PQ8NGU1 263 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 MAGEC3Q8TD91 643 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 FERD3LQ96RJ6 166 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 TRMOQ9BU70 441 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 LRRC61Q9BV99 259 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 SHCBP1LQ9BZQ2 653 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 TRIT1Q9H3H1 467 aaKnown RBP19.35■□□□□ 0.69
CLN3-205ENST00000359984 IMP3Q9NV31 184 aaKnown RBP19.35■□□□□ 0.69
CLN3-205ENST00000359984 STOX2Q9P2F5 926 aaPredicted RBP19.35■□□□□ 0.69
CLN3-205ENST00000359984 PILRBQ9UKJ0 227 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 TNFRSF10AO00220 468 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 SLC16A8O95907 504 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 RPN2P04844 631 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 HALP42357 657 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 CLCQ05315 142 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 TEAD4Q15561 434 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 PRAMEF14Q5SWL7 426 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 CRLF3Q8IUI8 442 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms