RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CAMK1GQ96NX5 476 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 MRPL46Q9H2W6 279 aaKnown RBP8.98□□□□□ -0.97
USP4-202ENST00000351842 DCDC2Q9UHG0 476 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 DCTN4Q9UJW0 460 aa8.98□□□□□ -0.97
USP4-202ENST00000351842 IGLV3-16A0A075B6K0 115 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PRR33A8MZF0 331 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 TMEM233B4DJY2 109 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 AQP9O43315 295 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 DLX3O60479 287 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 LILRB5O75023 590 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SKAP2O75563 359 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 IGLV3-19P01714 112 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ANXA6P08133 673 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 EEF1DP29692 281 aaKnown RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 PTPN5P54829 565 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 TRIM73Q86UV7 250 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 DENND6BQ8NEG7 585 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ZNF548Q8NEK5 533 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 STAG3L4Q8TBR4 150 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 MCOLN3Q8TDD5 553 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SLC37A2Q8TED4 501 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ZDHHC1Q8WTX9 485 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 GPR34Q9UPC5 381 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 CDYLQ9Y232 598 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PDE10AQ9Y233 779 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SLC22A14Q9Y267 594 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PLXNB3Q9ULL4 1909 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SCN2AQ99250 2005 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SCN3AQ9NY46 2000 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 A0A087X1B8 175 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ISM1B1AKI9 464 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 GALR2O43603 387 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 TYROBPO43914 113 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 NRP2O60462 931 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PRAMEF10O60809 474 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SMIM24O75264 130 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 CRCPO75575 148 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 CATP04040 527 aaKnown RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 POLR2CP19387 275 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 ALDH3A1P30838 453 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 CROCCP2Q86T23 111 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 MINDY1Q8N5J2 469 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 TEX9Q8N6V9 391 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 LRRC8CQ8TDW0 803 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 LCN9Q8WX39 176 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ZNF514Q96K75 400 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 ELF4Q99607 663 aaPredicted RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 TMEM109Q9BVC6 243 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 TRIM54Q9BYV2 358 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 EPN3Q9H201 632 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PILRBQ9UKJ0 227 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 HS3ST3A1Q9Y663 406 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 A0A1W2PR77 199 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ARHGAP10A1A4S6 786 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 WDR47O94967 919 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 TDGF1P13385 188 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 ENGP17813 658 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 SLC19A1P41440 591 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 BLKP51451 505 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 NXPH1P58417 271 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 HNRNPKP61978 463 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP4-202ENST00000351842 PPP1CAP62136 330 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 KCNA7Q96RP8 456 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 C1QTNF1Q9BXJ1 281 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 NUSAP1Q9BXS6 441 aaKnown RBP8.97□□□□□ -0.97
USP4-202ENST00000351842 FBXO4Q9UKT5 387 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 PCM1Q15154 2024 aa8.97□□□□□ -0.97
USP4-202ENST00000351842 LNP1A1A4G5 178 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 A8MT66 165 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 CHUKO15111 745 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 ITM2AO43736 263 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 RASSF9O75901 435 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 HSPA4LO95757 839 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 PROCP04070 461 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 CYP2A7P20853 494 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 RPS3P23396 243 aaKnown RBP eCLIP8.96□□□□□ -0.97
USP4-202ENST00000351842 CRHR1P34998 444 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 YPEL5P62699 121 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 CYP4F2P78329 520 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 DAB2P98082 770 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 BNC1Q01954 994 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 HHEXQ03014 270 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 PTCHD3Q3KNS1 767 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 CLEC6AQ6EIG7 209 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 SBSNQ6UWP8 590 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 RNF175Q8N4F7 328 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 FAM131CQ96AQ9 280 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 UBXN10Q96LJ8 280 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 TMEM237Q96Q45 408 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 MIPEPQ99797 713 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 MACROD1Q9BQ69 325 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 MCMBPQ9BTE3 642 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 GSDMCQ9BYG8 508 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 FGFR1OP2Q9NVK5 253 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 IRAK4Q9NWZ3 460 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 SENP1Q9P0U3 644 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 COPG2Q9UBF2 871 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 BTBD3Q9Y2F9 522 aa8.96□□□□□ -0.97
USP4-202ENST00000351842 TIMM22Q9Y584 194 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms