RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SETD6Q8TBK2 473 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 SLC22A18Q96BI1 424 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ARMC5Q96C12 935 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 MUC13Q9H3R2 512 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 TDP1Q9NUW8 608 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CICQ96RK0 1608 aaPredicted RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 NDUFS4O43181 175 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 PLIN3O60664 434 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 MMP20O60882 483 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 RGS20O76081 388 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CCT3P49368 545 aaKnown RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 CLCNKAP51800 687 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 KBTBD7Q8WVZ9 684 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 EFHD2Q96C19 240 aaPredicted RBP16.98■□□□□ 0.31
SHANK1-201ENST00000293441 DGAT2Q96PD7 388 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 SIX2Q9NPC8 291 aa16.98■□□□□ 0.31
SHANK1-201ENST00000293441 ILVBLA1L0T0 632 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 A8MUI8 341 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ALPPP05187 535 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 F7P08709 466 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 NRG3P56975 720 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 HFE2Q6ZVN8 426 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 GALNTL5Q7Z4T8 443 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CNTD1Q8N815 330 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 Q8N9G6 341 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ADAP2Q9NPF8 381 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CTPS2Q9NRF8 586 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 SCML2Q9UQR0 700 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 HS3ST4Q9Y661 456 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 A0A0J9YVX5 310 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 HCRTO43612 131 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 FAM92BQ6ZTR7 304 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 LRRTM4Q86VH4 590 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 IQCF2Q8IXL9 164 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 LMX1AQ8TE12 382 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CCM2Q9BSQ5 444 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 BTBD1Q9H0C5 482 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ADAMTS3O15072 1205 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 RLN1P04808 185 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 HOXB2P14652 356 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 TYRP14679 529 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 TCF4P15884 667 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 MPIP34949 423 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 PDX1P52945 283 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 MC1RQ01726 317 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 PLGLB1Q02325 96 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 MADCAM1Q13477 382 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 DCTN2Q13561 401 aaKnown RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 TMEM164Q5U3C3 297 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 LENG8Q96PV6 779 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ZSCAN5AQ9BUG6 496 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ABCB9Q9NP78 766 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 IFT80Q9P2H3 777 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 PHF24Q9UPV7 400 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 C9J4A7 227 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ZNF823P16415 610 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CBX5P45973 191 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 OLR1P78380 273 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 SMCO1Q147U7 214 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 SGCBQ16585 318 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 INAVAQ3KP66 663 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 ZNF599Q96NL3 588 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 GATA5Q9BWX5 397 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 OR51V1Q9H2C8 321 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CHMP1AQ9HD42 196 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 A0A075B6Q4 140 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 RPL10P27635 214 aaKnown RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 HSD17B2P37059 387 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 CASRP41180 1078 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 PAQR3Q6TCH7 311 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 SETD7Q8WTS6 366 aaKnown RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 TRIM63Q969Q1 353 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 NTAN1Q96AB6 310 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 DUSP26Q9BV47 211 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 RNF121Q9H920 327 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 RGS17Q9UGC6 210 aaPredicted RBP16.97■□□□□ 0.31
SHANK1-201ENST00000293441 NR2E1Q9Y466 385 aa16.97■□□□□ 0.31
SHANK1-201ENST00000293441 TLX3O43711 291 aaPredicted RBP16.96■□□□□ 0.31
SHANK1-201ENST00000293441 RNF19BQ6ZMZ0 732 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 ATG14Q6ZNE5 492 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 RASSF6Q6ZTQ3 369 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 CEP295NLQ96MC4 621 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 MIPEPQ99797 713 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 EBF3Q9H4W6 596 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 ZNF282Q9UDV7 671 aaPredicted RBP16.96■□□□□ 0.31
SHANK1-201ENST00000293441 RGS10O43665 173 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 PLGP00747 810 aaPredicted RBP16.96■□□□□ 0.31
SHANK1-201ENST00000293441 THRBP10828 461 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 IL12AP29459 219 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 RPL5P46777 297 aaKnown RBP16.96■□□□□ 0.31
SHANK1-201ENST00000293441 PRAMEF14Q5SWL7 426 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 FAM182AQ5T1J6 154 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 PRAMEF13Q5VWM6 474 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 GHDCQ8N2G8 530 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 POF1BQ8WVV4 589 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 FATE1Q969F0 183 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 MARCH7Q9H992 704 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 ARHGEF33A8MVX0 844 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 LOC110117498-PIK3R3F6TDL0 507 aa16.96■□□□□ 0.31
SHANK1-201ENST00000293441 CXCR6O00574 342 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms