RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 RHEBQ15382 184 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TEX44Q53QW1 395 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SPIN3Q5JUX0 258 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZYG11AQ6WRX3 759 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZFPM1Q8IX07 1006 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 GFM1Q96RP9 751 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 GORASP1Q9BQQ3 440 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ADAM7Q9H2U9 754 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 LYARQ9NX58 379 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 TNFP01375 233 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 MAZP56270 477 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 CAPSQ13938 189 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PDGFRLQ15198 375 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 DACT2Q5SW24 774 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 OR1F1O43749 312 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 MMP3P08254 477 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PEPDP12955 493 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CAP1Q01518 475 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FOXR2Q6PJQ5 311 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SLC22A15Q8IZD6 547 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TP53INP1Q96A56 240 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 DPEP2Q9H4A9 486 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 DKKL1Q9UK85 242 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 RPL36Q9Y3U8 105 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 TNS2Q63HR2 1409 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PAX7P23759 505 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CBLBQ13191 982 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 C8orf48Q96LL4 319 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TSSK3Q96PN8 268 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CLCA3PQ9Y6N3 262 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 HEATR5BQ9P2D3 2071 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 IQCF5A8MTL0 148 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SLC22A2O15244 555 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CPNE3O75131 537 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 TSPAN8P19075 237 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CPN2P22792 545 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 EPHA3P29320 983 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SLC5A9Q2M3M2 681 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TMEM220Q6QAJ8 160 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 MSL3Q8N5Y2 521 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 BORCS8Q96FH0 119 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FAXDC2Q96IV6 333 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CRTAC1Q9NQ79 661 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TMEM5Q9Y2B1 443 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PCDHGA11Q9Y5H2 935 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CYP3A7-CYP3A51PA0A087WV96 503 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FAM234BA2RU67 622 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 NADKO95544 446 aaPredicted RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 CYP3A7P24462 503 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 NSG1P42857 185 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PTGER3P43115 390 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 MPP1Q00013 466 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 NRG1Q02297 640 aaPredicted RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 CLCQ05315 142 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CEP295NLQ96MC4 621 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ABCG8Q9H221 673 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 MOV10Q9HCE1 1003 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 PCDHGA10Q9Y5H3 936 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 DCCP43146 1447 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 KLK3P07288 261 aaPredicted RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 PKMP14618 531 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 CXCR1P25024 350 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FASTKD3Q14CZ7 662 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 CA9Q16790 459 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SERPINA9Q86WD7 417 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SLC44A1Q8WWI5 657 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 MYOCQ99972 504 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 NDC1Q9BTX1 674 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 WASF3Q9UPY6 502 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CDK5RAP2Q96SN8 1893 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ALOX15BO15296 676 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 COQ9O75208 318 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TAF1AQ15573 450 aaPredicted RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 GPAT4Q86UL3 456 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 KLHL36Q8N4N3 616 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 DPYSL5Q9BPU6 564 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 B3GNT4Q9C0J1 378 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 KCND1Q9NSA2 647 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FLRT1Q9NZU1 646 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ATPIF1Q9UII2 106 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PPLO60437 1756 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ADRB2P07550 413 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 GHRHRQ02643 423 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 RIPPLY1Q0D2K3 151 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 RNASE12Q5GAN4 147 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 TMEM145Q8NBT3 493 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 OR52J3Q8NH60 311 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ZNF224Q9NZL3 707 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 U3KQV3 271 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ADAMTS13Q76LX8 1427 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 A0A075B6Q4 140 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 RPL7AP62424 266 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 RGMAQ96B86 450 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 NXNL1Q96CM4 212 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 UNC93B1Q9H1C4 597 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TBC1D17Q9HA65 648 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ANKHQ9HCJ1 492 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 C11orf16Q9NQ32 467 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 DUXAA6NLW8 204 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ZBTB22O15209 634 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms