RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TMEM121Q9BTD3 319 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 MFRPQ9BY79 579 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 GPR83Q9NYM4 423 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 GPN3Q9UHW5 284 aaPredicted RBP12.35□□□□□ -0.43
CD44-203ENST00000278386 REXO2Q9Y3B8 237 aaKnown RBP12.35□□□□□ -0.43
CD44-203ENST00000278386 ESPL1Q14674 2120 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 ANKRD12Q6UB98 2062 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 A0A0J9YY10 115 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 MIF4GDA9UHW6 222 aaKnown RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 PSMD3O43242 534 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 OR2B3O76000 313 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 SORBS2O94875 1100 aaKnown RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 FTCDO95954 541 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 GAS8O95995 478 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 CAPN1P07384 714 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 OR56A5P0C7T3 313 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 CSE1LP55060 971 aaKnown RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 RAPSNQ13702 412 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 FHL5Q5TD97 284 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 C1orf189Q5VU69 101 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 NAPRTQ6XQN6 538 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 PPP1R21Q6ZMI0 780 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 SYCE1Q8N0S2 351 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 ZBTB2Q8N680 514 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 TMEM102Q8N9M5 508 aaPredicted RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 GALNT11Q8NCW6 608 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 OR52K1Q8NGK4 314 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 MRFAP1L1Q96HT8 127 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 C17orf62Q9BQA9 187 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 DPH2Q9BQC3 489 aaPredicted RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 NUDT9Q9BW91 350 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 LRRC4CQ9HCJ2 640 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 SLAMF7Q9NQ25 335 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 TXLNGQ9NUQ3 528 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 IMPACTQ9P2X3 320 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 NDOR1Q9UHB4 597 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 PLAGL1Q9UM63 463 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 R3HDM2Q9Y2K5 976 aaKnown RBP12.34□□□□□ -0.43
CD44-203ENST00000278386 PCDHGB7Q9Y5F8 929 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 PRSS21Q9Y6M0 314 aa12.34□□□□□ -0.43
CD44-203ENST00000278386 KDM1AO60341 852 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 CEACAM4O75871 244 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 CHRM5P08912 532 aaPredicted RBP12.33□□□□□ -0.44
CD44-203ENST00000278386 FOXN2P32314 431 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 FOLR3P41439 243 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 CDH17Q12864 832 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 SLC9A5Q14940 896 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 PRR30Q53SZ7 412 aaPredicted RBP12.33□□□□□ -0.44
CD44-203ENST00000278386 SEL1L2Q5TEA6 688 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 MLIPQ5VWP3 458 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 PAPD7Q5XG87 772 aaKnown RBP12.33□□□□□ -0.44
CD44-203ENST00000278386 AFTPHQ6ULP2 937 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 PACS1Q6VY07 963 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 UNC5AQ6ZN44 842 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 MED25Q71SY5 747 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 MRGPREQ86SM8 312 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 LINC00523Q86TU6 105 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 TBC1D21Q8IYX1 336 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 TXLNBQ8N3L3 684 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 OR5K2Q8NHB8 316 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 TCTN2Q96GX1 697 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 TTC1Q99614 292 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 DHRS4Q9BTZ2 278 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 SLC29A3Q9BZD2 475 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 FAM60AQ9NP50 221 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 MLXIPLQ9NP71 852 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 POLG2Q9UHN1 485 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 AP1M2Q9Y6Q5 423 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 ICE1Q9Y2F5 2266 aa12.33□□□□□ -0.44
CD44-203ENST00000278386 RP1L1Q8IWN7 2480 aaPredicted RBP12.33□□□□□ -0.44
CD44-203ENST00000278386 SPTBN1Q01082 2364 aaKnown RBP12.33□□□□□ -0.44
CD44-203ENST00000278386 CCDC162PA2VCL2 907 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 ISM1B1AKI9 464 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 E7EVH7 732 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 F8W8V4 182 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 ZSCAN9O15535 394 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 IFNB1P01574 187 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 CBSLP0DN79 551 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 CBSP35520 551 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 KLF1Q13351 362 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 ZIC1Q15915 447 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 ZNF385CQ66K41 422 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 SLC6A19Q695T7 634 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 JMJD6Q6NYC1 403 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 TAX1BP1Q86VP1 789 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 HPS6Q86YV9 775 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 ZNF655Q8N720 491 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 SLC35B2Q8TB61 432 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 ATG4AQ8WYN0 398 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 OR2A14Q96R47 310 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 DESI2Q9BSY9 194 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 SPRTNQ9H040 489 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 SPHK1Q9NYA1 384 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 IFT80Q9P2H3 777 aaPredicted RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 DHCR7Q9UBM7 475 aaKnown RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 SRPK3Q9UPE1 567 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 PTRH2Q9Y3E5 179 aaKnown RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 MAP4K5Q9Y4K4 846 aa12.32□□□□□ -0.44
CD44-203ENST00000278386 SPTAN1Q13813 2472 aaKnown RBP12.32□□□□□ -0.44
CD44-203ENST00000278386 USP9XQ93008 2570 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms