RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PIP5K1BO14986 540 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 COQ9O75208 318 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 PRAMEF12O95522 483 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 TNFP01375 233 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 ACSBG2Q5FVE4 666 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 CAMKVQ8NCB2 501 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 ATG10Q9H0Y0 220 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 B3GAT2Q9NPZ5 323 aa18.81■□□□□ 0.6
UPF1-201ENST00000262803 RABGGTBP53611 331 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 C1GALT1C1Q96EU7 318 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 ZDHHC3Q9NYG2 299 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 SPIN1Q9Y657 262 aaPredicted RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 H0YJX3 145 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 KMOO15229 486 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 S100A9P06702 114 aaKnown RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 MPIP34949 423 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 OLFML2AQ68BL7 652 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 ADGRD2Q7Z7M1 963 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 CIR1Q86X95 450 aaPredicted RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 OXR1Q8N573 874 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 TMEM145Q8NBT3 493 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 C8orf48Q96LL4 319 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 IQCF5A8MTL0 148 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 ALPPP05187 535 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 DNM1P34Q6PK57 102 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 SUSD3Q96L08 255 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 GSDMCQ9BYG8 508 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 TRMT13Q9NUP7 481 aaKnown RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 TMEM59LQ9UK28 342 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 WBP11Q9Y2W2 641 aaKnown RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 GSTT2BP0CG30 244 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 AQP4P55087 323 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 TXNRD3NBQ6F5E7 133 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 OR5T3Q8NGG3 340 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 C12orf66Q96MD2 445 aa18.8■□□□□ 0.6
UPF1-201ENST00000262803 FCF1Q9Y324 198 aaKnown RBP18.8■□□□□ 0.6
UPF1-201ENST00000262803 TCRBV7S3A2A0A539 114 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 NRLP54845 237 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 SH3D19Q5HYK7 790 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 HID1Q8IV36 788 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 C15orf40Q8WUR7 153 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 MGME1Q9BQP7 344 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 NFAT5O94916 1531 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 GALK1P51570 392 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 FCHO2Q0JRZ9 810 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 ZMYND11Q15326 602 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.79■□□□□ 0.69e-9■□□□□ 8.2
UPF1-201ENST00000262803 FAM131AQ6UXB0 335 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 CRYBG2Q8N1P7 616 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 NAT14Q8WUY8 206 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 CPNE2Q96FN4 548 aaPredicted RBP18.79■□□□□ 0.6
UPF1-201ENST00000262803 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.79■□□□□ 0.6
UPF1-201ENST00000262803 SLC2A4RGQ9NR83 387 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 LOC110117498-PIK3R3F6TDL0 507 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 K7EPI3 171 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 SLC1A2P43004 574 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 RPS14P62263 151 aaKnown RBP18.79■□□□□ 0.6
UPF1-201ENST00000262803 OVCA2Q8WZ82 227 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 PIK3R3Q92569 461 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 PNPLA2Q96AD5 504 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 LPIN3Q9BQK8 851 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 CCM2Q9BSQ5 444 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 USP29Q9HBJ7 922 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 MCCC2Q9HCC0 563 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 DZANK1Q9NVP4 752 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 TAS2R7Q9NYW3 318 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 EIF2B4Q9UI10 523 aaKnown RBP18.79■□□□□ 0.6
UPF1-201ENST00000262803 FBXW2Q9UKT8 454 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 MAP4K5Q9Y4K4 846 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 SLIT2O94813 1529 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 NEMP2A6NFY4 417 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 GNALP38405 381 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 WASP42768 502 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 ECT2LQ008S8 904 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 SMU1Q2TAY7 513 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 GDPD4Q6W3E5 623 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 CCDC54Q8NEL0 328 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 EPYCQ99645 322 aa18.79■□□□□ 0.6
UPF1-201ENST00000262803 H0YGN5 161 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 CFHP08603 1231 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SLC13A2Q13183 592 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SWI5Q1ZZU3 235 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 RASSF6Q6ZTQ3 369 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 IFNL1Q8IU54 200 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 TIMMDC1Q9NPL8 285 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 C19orf25Q9UFG5 118 aaPredicted RBP18.78■□□□□ 0.6
UPF1-201ENST00000262803 CNOT6Q9ULM6 557 aaKnown RBP18.78■□□□□ 0.6
UPF1-201ENST00000262803 AFDNP55196 1824 aaKnown RBP18.78■□□□□ 0.6
UPF1-201ENST00000262803 ANGPTL1O95841 491 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 LIX1Q8N485 282 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 EBF3Q9H4W6 596 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SUV39H2Q9H5I1 410 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 ZNF358Q9NW07 568 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 FKBPLQ9UIM3 349 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 PCDHB11Q9Y5F2 797 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 HMGN1P05114 100 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 RPL26P61254 145 aaKnown RBP18.78■□□□□ 0.6
UPF1-201ENST00000262803 SLC35G1Q2M3R5 365 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SOWAHAQ2M3V2 549 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms