RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 IKBIPQ70UQ0 350 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 PTAR1Q7Z6K3 402 aaPredicted RBP3.49□□□□□ -1.85
CD44-239ENST00000639002 LACC1Q8IV20 430 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 LMNTD2Q8IXW0 634 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 LSMEM2Q8N112 164 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 MARVELD2Q8N4S9 558 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 OR13J1Q8NGT2 312 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 SUSD6Q92537 303 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 USP6NLQ92738 828 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 AZIN2Q96A70 460 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 OR6C1Q96RD1 312 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 SH2D4AQ9H788 454 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 OSER1Q9NX31 292 aa3.49□□□□□ -1.85
CD44-239ENST00000639002 ORC3Q9UBD5 711 aaPredicted RBP3.49□□□□□ -1.85
CD44-239ENST00000639002 EXO1Q9UQ84 846 aaKnown RBP3.49□□□□□ -1.85
CD44-239ENST00000639002 MYO1GB0I1T2 1018 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 GAPDHSO14556 408 aaPredicted RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 CREG1O75629 220 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 TM4SF1P30408 202 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 PPARGP37231 505 aaPredicted RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 CX3CL1P78423 397 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 GRAPQ13588 217 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 NECTIN1Q15223 517 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 FAM98BQ52LJ0 330 aaKnown RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 C2CD6Q53TS8 623 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 INTS8Q75QN2 995 aaKnown RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 CHST9Q7L1S5 443 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 CDC20BQ86Y33 519 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 MCEMP1Q8IX19 187 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 OR5AP2Q8NGF4 316 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 GTF3AQ92664 365 aaKnown RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 LRRC59Q96AG4 307 aaKnown RBP3.48□□□□□ -1.85
CD44-239ENST00000639002 CENPTQ96BT3 561 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 MTERF3Q96E29 417 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 PGAM5Q96HS1 289 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 IRAK4Q9NWZ3 460 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 TAS2R14Q9NYV8 317 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 ZDHHC2Q9UIJ5 367 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 ANGPTL3Q9Y5C1 460 aa3.48□□□□□ -1.85
CD44-239ENST00000639002 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.48□□□□□ -1.85
CD44-239ENST00000639002 IGKV6D-41A0A0C4DH26 115 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.47□□□□□ -1.85
CD44-239ENST00000639002 CD4P01730 458 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 MMP9P14780 707 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 UGT1A4P22310 534 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 CA6P23280 308 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 CDH8P55286 799 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 GSDMDP57764 484 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 KCNC3Q14003 757 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 SGSM1Q2NKQ1 1148 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 XKR3Q5GH77 459 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 HAUS3Q68CZ6 603 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 ERC1Q8IUD2 1116 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 FAM114A1Q8IWE2 563 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 Q8N377 158 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 TRIML1Q8N9V2 468 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 NSMCE3Q96MG7 304 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 PRR34Q9NV39 138 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 AASSQ9UDR5 926 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.47□□□□□ -1.85
CD44-239ENST00000639002 WDR37Q9Y2I8 494 aa3.47□□□□□ -1.85
CD44-239ENST00000639002 A0A1W2PPR1 153 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 CDRT15L2A8MXV6 281 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 SOCS3O14543 225 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 ZNF195O14628 629 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 SSX4O60224 188 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 DFFBO76075 338 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 CLTBP09497 229 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 OPRL1P41146 370 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 GARSP41250 739 aaKnown RBP3.46□□□□□ -1.86
CD44-239ENST00000639002 LEPRP48357 1165 aaKnown RBP3.46□□□□□ -1.86
CD44-239ENST00000639002 KRTAP12-2P59991 146 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 COX10Q12887 443 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 NFATC2Q13469 925 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 BSPRYQ5W0U4 402 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 GPRIN3Q6ZVF9 776 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 LRRTM1Q86UE6 522 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 AACSQ86V21 672 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 HOGA1Q86XE5 327 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 TEX11Q8IYF3 940 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 CEP57L1Q8IYX8 460 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 RAB42Q8N4Z0 105 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 OR5M8Q8NGP6 311 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 OR2AJ1Q8NGZ0 328 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 IRGQQ8WZA9 623 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 MOAP1Q96BY2 351 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 KRT12Q99456 494 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 BTBD10Q9BSF8 475 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 LRRC61Q9BV99 259 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 S1PR5Q9H228 398 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 PANK4Q9NVE7 773 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 EPHA6Q9UF33 1036 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 TUBE1Q9UJT0 475 aa3.46□□□□□ -1.86
CD44-239ENST00000639002 ZNF646O15015 1829 aaPredicted RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 J3KRW8 73 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 USO1O60763 962 aaKnown RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 MITFO75030 526 aaPredicted RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 RB1P06400 928 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 CAPN2P17655 700 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 CYP2A7P20853 494 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms