RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 WRAP53Q9BUR4 548 aaKnown RBP10.4□□□□□ -0.74
CUX1-221ENST00000622516 ACTR8Q9H981 624 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 PCDH12Q9NPG4 1184 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 MAFFQ9ULX9 164 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 ERVW-1Q9UQF0 538 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 SLC22A14Q9Y267 594 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 ST14Q9Y5Y6 855 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 AGAP14A8MT82 685 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 K7EPI3 171 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 EPORP19235 508 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 SULT1C3Q6IMI6 304 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 EFL1Q7Z2Z2 1120 aaKnown RBP10.4□□□□□ -0.75
CUX1-221ENST00000622516 GFM2Q969S9 779 aaKnown RBP10.4□□□□□ -0.75
CUX1-221ENST00000622516 GBP5Q96PP8 586 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 RIOK2Q9BVS4 552 aaKnown RBP10.4□□□□□ -0.75
CUX1-221ENST00000622516 KCTD5Q9NXV2 234 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 COQ6Q9Y2Z9 468 aa10.4□□□□□ -0.75
CUX1-221ENST00000622516 PLXNB3Q9ULL4 1909 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 DHRS12A0PJE2 317 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 SOCS2O14508 198 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 EEDO75530 441 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 ANXA5P08758 320 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 HLA-EP13747 358 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ATP1B2P14415 290 aaPredicted RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 CHN2P52757 468 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 OR4D2P58180 307 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ABRQ12979 859 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 IMPG1Q17R60 797 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 TTLL9Q3SXZ7 439 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 FAM174BQ3ZCQ3 159 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ARHGAP15Q53QZ3 475 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 TMC5Q6UXY8 1006 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 LIX1Q8N485 282 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ELMO1Q92556 727 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ISG20Q96AZ6 181 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 CPEB1Q9BZB8 566 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 FAM83DQ9H4H8 585 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 PRM3Q9NNZ6 103 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 LEF1Q9UJU2 399 aaPredicted RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 CCL27Q9Y4X3 112 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ARHGAP10A1A4S6 786 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 FAM234BA2RU67 622 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 FADS2P1A8MWK0 482 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 WDR47O94967 919 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 OR56A5P0C7T3 313 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 AOAHP28039 575 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 PREPP48147 710 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 EMX2Q04743 252 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 PRKCQQ04759 706 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 SF1Q15637 639 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 PTCHD3Q3KNS1 767 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 PDCD4Q53EL6 469 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 TMEM240Q5SV17 173 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 LYPLAL1Q5VWZ2 237 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ELMSAN1Q6PJG2 1045 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 SUSD1Q6UWL2 747 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 ZBTB49Q6ZSB9 765 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 METTL3Q86U44 580 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 ZFAND4Q86XD8 727 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 BTBD9Q96Q07 612 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 PRPF18Q99633 342 aaKnown RBP10.39□□□□□ -0.75
CUX1-221ENST00000622516 RAD9AQ99638 391 aa10.39□□□□□ -0.75
CUX1-221ENST00000622516 OTOL1A6NHN0 477 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 WASH3PC4AMC7 463 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PLOD2O00469 737 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 KPNA3O00505 521 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 ANKRD28O15084 1053 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 DFNA5O60443 496 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 OR6B1O95007 311 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 LRATO95237 230 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PDYNP01213 254 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 TIMP2P16035 220 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PBLDP30039 288 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 ZNF77Q15935 545 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 CCSMST1Q4G0I0 132 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 SPANXN4Q5MJ08 99 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 NEK5Q6P3R8 708 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 SATL1Q86VE3 508 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ANKRD46Q86W74 232 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 FRS2Q8WU20 508 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 RSPRY1Q96DX4 576 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 MRGPRX3Q96LB0 322 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ZNF641Q96N77 438 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 ARPC5LQ9BPX5 153 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 HEPHQ9BQS7 1158 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 RPF2Q9H7B2 306 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 PFDN4Q9NQP4 134 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ZIM2Q9NZV7 527 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 VAPAQ9P0L0 249 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 MRPS23Q9Y3D9 190 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 MTCL1Q9Y4B5 1905 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 PRAMEF4O60810 478 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PCNAP12004 261 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 HSD17B1P14061 328 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 ETS2P15036 469 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 XPAP23025 273 aaPredicted RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 CTSCP53634 463 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 POLR2LP62875 67 aaKnown RBP10.38□□□□□ -0.75
CUX1-221ENST00000622516 MYBPC1Q00872 1141 aa10.38□□□□□ -0.75
CUX1-221ENST00000622516 PLOD1Q02809 727 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms