RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CLEC18AA5D8T8 446 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 TMEM150CB9EJG8 249 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 BTN3A1O00481 513 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 OR56A5P0C7T3 313 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 RORAP35398 523 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 ZNF75DP51815 510 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 CDH17Q12864 832 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 ZNF658BQ4V348 819 aaPredicted RBP11.55□□□□□ -0.56
UPF3B-204ENST00000619445 PLEKHS1Q5SXH7 462 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 FAM199XQ6PEV8 388 aaPredicted RBP11.55□□□□□ -0.56
UPF3B-204ENST00000619445 SPESP1Q6UW49 350 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 CLEC18BQ6UXF7 455 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 NLRP9Q7RTR0 991 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 SYTL1Q8IYJ3 562 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 TBC1D21Q8IYX1 336 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 FAM71DQ8N9W8 422 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 CLEC18CQ8NCF0 446 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 OR52E1Q8NGJ3 308 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 DENND1AQ8TEH3 1009 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 PEX13Q92968 403 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 TCTN2Q96GX1 697 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 FAM96AQ9H5X1 160 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 MLXIPLQ9NP71 852 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 SMARCAL1Q9NZC9 954 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 RIMKLBQ9ULI2 386 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 SRPK3Q9UPE1 567 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 DUSP10Q9Y6W6 482 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 COL12A1Q99715 3063 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 ESPL1Q14674 2120 aa11.55□□□□□ -0.56
UPF3B-204ENST00000619445 HEATR9A2RTY3 570 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 GRID2IPA4D2P6 1211 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 RCCD1A6NED2 376 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 MROH6A6NGR9 719 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 TTLL8A6PVC2 850 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 DPM1O60762 260 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 VPS4BO75351 444 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 TMEM63AO94886 807 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 RPN2P04844 631 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 MSNP26038 577 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 FDFT1P37268 417 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ARCN1P48444 511 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 KLF1Q13351 362 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 OLIG2Q13516 323 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SPARCL1Q14515 664 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 POU6F1Q14863 301 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 IGFBP7Q16270 282 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 DBN1Q16643 649 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SYTL3Q4VX76 610 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 TMEM135Q86UB9 458 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 LILRA3Q8N6C8 439 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ENDOVQ8N8Q3 282 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 DNAAF3Q8N9W5 541 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 GALNT11Q8NCW6 608 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SLC35B2Q8TB61 432 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 PROKR1Q8TCW9 393 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ADAMTS17Q8TE56 1095 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 TRAPPC9Q96Q05 1148 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 BAG1Q99933 345 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 FAM118BQ9BPY3 351 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 HGH1Q9BTY7 390 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 LACRTQ9GZZ8 138 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 PCMTD2Q9NV79 361 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ACTR10Q9NZ32 417 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 VPS4AQ9UN37 437 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ASF1AQ9Y294 204 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ANKRD12Q6UB98 2062 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 CCDC78A2IDD5 438 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ARGFXA6NJG6 315 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 BTN3A3O00478 584 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 CEACAM4O75871 244 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 GP1BBP13224 206 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ST6GAL1P15907 406 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 PDHA2P29803 388 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 CCL11P51671 97 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 RPS18P62269 152 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SRSF1Q07955 248 aaKnown RBP eCLIP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ABRQ12979 859 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 IL10RAQ13651 578 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 KIR2DS3Q14952 304 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 NCF4Q15080 339 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 DNAJC21Q5F1R6 531 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 AARS2Q5JTZ9 985 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 AFTPHQ6ULP2 937 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ADGRF3Q8IZF5 1079 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 RNF10Q8N5U6 811 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 CLDN19Q8N6F1 224 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 C19orf47Q8N9M1 422 aaKnown RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SLC38A9Q8NBW4 561 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 OR1L3Q8NH93 324 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 OR5K2Q8NHB8 316 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 ELMO1Q92556 727 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 NACC2Q96BF6 587 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SLC22A18Q96BI1 424 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 SGSM3Q96HU1 749 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 AP1M1Q9BXS5 423 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 AKIRIN1Q9H9L7 192 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-204ENST00000619445 C5AR2Q9P296 337 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 PLAAQ9Y263 795 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 MRFAP1Q9Y605 127 aa11.54□□□□□ -0.56
UPF3B-204ENST00000619445 A0A0J9YY10 115 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms