RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 C9orf172C9J069 976 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 MATN2O00339 956 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 KIF1CO43896 1103 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 PRAMEF10O60809 474 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 NIPSNAP2O75323 286 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 CHRM3P20309 590 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 RAB15P59190 212 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 PPP1CAP62136 330 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 MC2RQ01718 297 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 PRKAA1Q13131 559 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 WHAMMP3Q1A5X7 153 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 ZNF789Q5FWF6 425 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 DNTTIP2Q5QJE6 756 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 HP1BP3Q5SSJ5 553 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 DUPD1Q68J44 220 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 UNC5BQ8IZJ1 945 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 KCNE4Q8WWG9 221 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 KLHL6Q8WZ60 621 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 UBXN4Q92575 508 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 CFAP36Q96G28 342 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 NAF1Q96HR8 494 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 DDA1Q9BW61 102 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 RAB17Q9H0T7 212 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 CCDC68Q9H2F9 335 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 IARS2Q9NSE4 1012 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 ZC3H7BQ9UGR2 993 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 ACSL6Q9UKU0 697 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 TDRKHQ9Y2W6 561 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 UTP11Q9Y3A2 253 aaKnown RBP16.38■□□□□ 0.21
TRIM28-215ENST00000601150 PCDHGA3Q9Y5H0 932 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 TEX264Q9Y6I9 313 aa16.38■□□□□ 0.21
TRIM28-215ENST00000601150 TLCD2A6NGC4 264 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 E5RI56 91 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 KDM1AO60341 852 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 RPN2P04844 631 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 ERVK-10P10266 1014 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 POLR2CP19387 275 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-215ENST00000601150 SHMT2P34897 504 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 SEPHS1P49903 392 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 ABRQ12979 859 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 PDIA2Q13087 525 aaKnown RBP16.37■□□□□ 0.21
TRIM28-215ENST00000601150 CBLBQ13191 982 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 DCAF12Q5T6F0 453 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 UNC5DQ6UXZ4 953 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 UNC5AQ6ZN44 842 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 AMIGO1Q86WK6 493 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 CERS2Q96G23 380 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 ASPSCR1Q9BZE9 553 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 DPH1Q9BZG8 443 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 FBXO8Q9NRD0 319 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 LATS2Q9NRM7 1088 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 SIDT1Q9NXL6 827 aaKnown RBP16.37■□□□□ 0.21
TRIM28-215ENST00000601150 FOXJ2Q9P0K8 574 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 SEMA5BQ9P283 1151 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 ICKQ9UPZ9 632 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 COMMD10Q9Y6G5 202 aa16.37■□□□□ 0.21
TRIM28-215ENST00000601150 PKD1L2Q7Z442 2459 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 SDK2Q58EX2 2172 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 IGHV5-51A0A0C4DH38 117 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 GSAPA4D1B5 854 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 E7ESA3 106 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 BTN3A1O00481 513 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 F7P08709 466 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-215ENST00000601150 CD82P27701 267 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 ATP5DP30049 168 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 MPP1Q00013 466 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 TUBB2AQ13885 445 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 STEAP4Q687X5 459 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 KMT5CQ86Y97 462 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 ANKMY2Q8IV38 441 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 SPACA3Q8IXA5 215 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 CARFQ8N187 725 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 ZBTB2Q8N680 514 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 C2CD4AQ8NCU7 369 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-215ENST00000601150 CFAP61Q8NHU2 1237 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 PMEPA1Q969W9 287 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 FAM136AQ96C01 138 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 TEFMQ96QE5 360 aaKnown RBP16.36■□□□□ 0.21
TRIM28-215ENST00000601150 MAP3K3Q99759 626 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 WDR83Q9BRX9 315 aaKnown RBP16.36■□□□□ 0.21
TRIM28-215ENST00000601150 TUBB2BQ9BVA1 445 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 XKR8Q9H6D3 395 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 PLAC1Q9HBJ0 212 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 GRHL1Q9NZI5 618 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 POMT2Q9UKY4 750 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 B3GALT1Q9Y5Z6 326 aa16.36■□□□□ 0.21
TRIM28-215ENST00000601150 C2orf74A8MZ97 194 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 BTN3A3O00478 584 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 KLK10O43240 276 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 HAUS5O94927 633 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 NELFEP18615 380 aaKnown RBP16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ITPKBP27987 946 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ABCG1P45844 678 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 KPNA2P52292 529 aaKnown RBP16.35■□□□□ 0.21
TRIM28-215ENST00000601150 GBX1Q14549 363 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ANKS6Q68DC2 871 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ZNF549Q6P9A3 640 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 CNSTQ6PJW8 725 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 CEACAM20Q6UY09 585 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 KIAA0408Q6ZU52 694 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms