RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	ARHGEF18	Q6ZSZ5	1173 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	CDHR3	Q6ZTQ4	885 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	TAS2R42	Q7RTR8	314 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	AMIGO1	Q86WK6	493 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	KLHDC8B	Q8IXV7	354 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	TAB3	Q8N5C8	712 aa	Predicted RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	ZBTB2	Q8N680	514 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	FAM71D	Q8N9W8	422 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	GALNT11	Q8NCW6	608 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	OR5AR1	Q8NGP9	310 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	HEXDC	Q8WVB3	486 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	TFG	Q92734	400 aa	Predicted RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	NUDT9	Q9BW91	350 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	MFRP	Q9BY79	579 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC7A5P2	Q9GIP4	190 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	TFB2M	Q9H5Q4	396 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	MVB12B	Q9H7P6	319 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	VPS37B	Q9H9H4	285 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	LRRC4C	Q9HCJ2	640 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	FAM60A	Q9NP50	221 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	LUC7L	Q9NQ29	371 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	NLE1	Q9NVX2	485 aa	Predicted RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	SMARCAL1	Q9NZC9	954 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	MED13	Q9UHV7	2174 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	ICK	Q9UPZ9	632 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	REXO2	Q9Y3B8	237 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	PRSS21	Q9Y6M0	314 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	PRRC2C	Q9Y520	2896 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	SPTAN1	Q13813	2472 aa	Known RBP	10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	SPTB	P11277	2137 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	NBPF19	A0A087WUL8	3843 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	GRID2IP	A4D2P6	1211 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	OR51F1	A6NGY5	319 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776		E7EQ34	232 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776		H7C0S8	307 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	HCRTR1	O43613	425 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	TJP3	O95049	919 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	AGFG2	O95081	481 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	CTSB	P07858	339 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	MSL3P1	P0C860	447 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	RNF224	P0DH78	156 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	UGT2B7	P16662	529 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	OTX2	P32243	289 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	CD151	P48509	253 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	RPA4	Q13156	261 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	BRD3	Q15059	726 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	ZIC1	Q15915	447 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	C1orf189	Q5VU69	101 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF385C	Q66K41	422 aa	Predicted RBP	10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	SPESP1	Q6UW49	350 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	C19orf47	Q8N9M1	422 aa	Known RBP	10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	LRRC57	Q8N9N7	239 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776		Q8NA96	180 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	CDKN2AIPNL	Q96HQ2	116 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	PPP1R2P1	Q96PQ5	205 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	C19orf43	Q9BQ61	176 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	LACRT	Q9GZZ8	138 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	SYTL2	Q9HCH5	934 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	SPHK1	Q9NYA1	384 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	FEZ2	Q9UHY8	353 aa	Predicted RBP	10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	SERTAD3	Q9UJW9	196 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF451	Q9Y4E5	1061 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	MAP4K5	Q9Y4K4	846 aa		10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.19	□□□□□ -0.78
LSM4-205	ENST00000597776	TEX15	Q9BXT5	2789 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776		C9J4A7	227 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	MAP3K7	O43318	606 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	SEMA7A	O75326	666 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	TPBGL	P0DKB5	382 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	CBSL	P0DN79	551 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	CBS	P35520	551 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	CETN2	P41208	172 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	GDF10	P55107	478 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	FOXL2	P58012	376 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	CACNG1	Q06432	222 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	INPP5J	Q15735	1006 aa	Predicted RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	PARP6	Q2NL67	630 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	CCDC38	Q502W7	563 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	FHL5	Q5TD97	284 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC6A19	Q695T7	634 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	JMJD6	Q6NYC1	403 aa	Predicted RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF449	Q6P9G9	518 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	RAD9B	Q6WBX8	426 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	UNC5A	Q6ZN44	842 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	HOOK3	Q86VS8	718 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	TMEM151B	Q8IW70	566 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	ACRBP	Q8NEB7	543 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	STYX	Q8WUJ0	223 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	ELMO1	Q92556	727 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	LRRC45	Q96CN5	670 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	SPRTN	Q9H040	489 aa	Predicted RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	LRRC40	Q9H9A6	602 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	GPR83	Q9NYM4	423 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	MAP10	Q9P2G4	905 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	PLAGL1	Q9UM63	463 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	ASF1A	Q9Y294	204 aa		10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	R3HDM2	Q9Y2K5	976 aa	Known RBP	10.18	□□□□□ -0.78
LSM4-205	ENST00000597776	TDRKH	Q9Y2W6	561 aa	Known RBP	10.18	□□□□□ -0.78

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