RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ASB11Q8WXH4 323 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 USP7Q93009 1102 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 EME1Q96AY2 570 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 FAM83DQ9H4H8 585 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 SLC32A1Q9H598 525 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 PARVBQ9HBI1 364 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 PCDH12Q9NPG4 1184 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 KLQ9UEF7 1012 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 AP4B1Q9Y6B7 739 aa19.27■□□□□ 0.68
CLIP3-206ENST00000593074 LOC730098B7Z3J9 87 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 FFAR3O14843 346 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 GPR42O15529 346 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 AP1G1O43747 822 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 ASLP04424 464 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 CTSLP07711 333 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 SRPRAP08240 638 aaKnown RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 VIPR2P41587 438 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 CREB5Q02930 508 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 HSPA14Q0VDF9 509 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 MAD2L1Q13257 205 aaPredicted RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 HMBOX1Q6NT76 420 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 LRRC70Q7Z2Q7 622 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 WFIKKN2Q8TEU8 576 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 RSPRY1Q96DX4 576 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 TRIM8Q9BZR9 551 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 FARSBQ9NSD9 589 aaKnown RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 INTS7Q9NVH2 962 aaKnown RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 ASIC5Q9NY37 505 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 SLAMF8Q9P0V8 285 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 EGFL7Q9UHF1 273 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 SNX13Q9Y5W8 968 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 MANBAO00462 879 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 HOXC11O43248 304 aaPredicted RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 ULK1O75385 1050 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 TIMP2P16035 220 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 NFKBIAP25963 317 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 CHN2P52757 468 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 RPL38P63173 70 aaKnown RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 INPP5AQ14642 412 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 FXNQ16595 210 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 MTX3Q5HYI7 312 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 HENMT1Q5T8I9 393 aaKnown RBP19.26■□□□□ 0.67
CLIP3-206ENST00000593074 GALNT13Q8IUC8 556 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 VRK3Q8IV63 474 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 SCAMP4Q969E2 229 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 SEMA6AQ9H2E6 1030 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 CERS4Q9HA82 394 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 IL36AQ9UHA7 158 aa19.26■□□□□ 0.67
CLIP3-206ENST00000593074 DHRS12A0PJE2 317 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 CFAP99D6REC4 459 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 KPNA5O15131 536 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SLC16A5O15375 505 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SGTAO43765 313 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 AP2A2O94973 939 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SLC2A4P14672 509 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 VARSP26640 1264 aaKnown RBP19.25■□□□□ 0.67
CLIP3-206ENST00000593074 LIPEQ05469 1076 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 KIAA0040Q15053 153 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 ZXDCQ2QGD7 858 aaPredicted RBP19.25■□□□□ 0.67
CLIP3-206ENST00000593074 TCEAL5Q5H9L2 206 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 NANOGP8Q6NSW7 305 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SLC2A7Q6PXP3 512 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SERPINA13PQ6UXR4 307 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 DLEU7Q6UYE1 221 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 Q6ZVL8 140 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 ERMP1Q7Z2K6 904 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 SPPL2CQ8IUH8 684 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 TRAM1L1Q8N609 369 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 PHC3Q8NDX5 983 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 DDHD1Q8NEL9 900 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 LRIG1Q96JA1 1093 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 KCTD14Q9BQ13 255 aaPredicted RBP19.25■□□□□ 0.67
CLIP3-206ENST00000593074 NANOGQ9H9S0 305 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 RAD18Q9NS91 495 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 DKK3Q9UBP4 350 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 ZNF490Q9ULM2 529 aaPredicted RBP19.25■□□□□ 0.67
CLIP3-206ENST00000593074 CHD7Q9P2D1 2997 aa19.25■□□□□ 0.67
CLIP3-206ENST00000593074 NUP210Q8TEM1 1887 aaPredicted RBP19.25■□□□□ 0.67
CLIP3-206ENST00000593074 GFYI3L273 518 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 RSL1D1O76021 490 aaKnown RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 CLDN9O95484 217 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 BMP2P12643 396 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 CASP2P42575 452 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 SLC6A12P48065 614 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 NRIP1P48552 1158 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 HNMTP50135 292 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ST8SIA6P61647 398 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 BOP1Q14137 746 aaKnown RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 GGTA1PQ4G0N0 100 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ZNF805Q5CZA5 627 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 NEK10Q6ZWH5 1172 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 HID1Q8IV36 788 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 GALNT4Q8N4A0 578 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ANKFN1Q8N957 763 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 HCAR2Q8TDS4 363 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 MTG2Q9H4K7 406 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 EIF3LQ9Y262 564 aaKnown RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 TIPRLO75663 272 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 PSMA4P25789 261 aaKnown RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ETV3P41162 512 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms