RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 H7C0S8 307 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 QSOX1O00391 747 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 MFAP3LO75121 409 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CBX6O95503 412 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 ATP5OP48047 213 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 LMAN1P49257 510 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 MRPL49Q13405 166 aaKnown RBP13.54□□□□□ -0.24
VMP1-209ENST00000588915 ATP1A4Q13733 1029 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 BOP1Q14137 746 aaKnown RBP13.54□□□□□ -0.24
VMP1-209ENST00000588915 MYBPC3Q14896 1274 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 PTCHD3Q3KNS1 767 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 ANKRD20A2Q5SQ80 823 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 ANKRD20A1Q5TYW2 823 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 ANKRD20A3Q5VUR7 823 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 HIST2H2BCQ6DN03 193 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CDHR3Q6ZTQ4 885 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 MAMDC2Q7Z304 686 aaPredicted RBP13.54□□□□□ -0.24
VMP1-209ENST00000588915 HOOK3Q86VS8 718 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CNGA4Q8IV77 575 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CCDC50Q8IVM0 306 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CLEC1AQ8NC01 280 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 OR13C4Q8NGS5 318 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 PRR7Q8TB68 274 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 PROKR1Q8TCW9 393 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 TM9SF4Q92544 642 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 HAUS1Q96CS2 278 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 SNRNP40Q96DI7 357 aaKnown RBP13.54□□□□□ -0.24
VMP1-209ENST00000588915 GORASP1Q9BQQ3 440 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 ACTR10Q9NZ32 417 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 B3GNT3Q9Y2A9 372 aa13.54□□□□□ -0.24
VMP1-209ENST00000588915 CREBBPQ92793 2442 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 ENO4A6NNW6 628 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 H3BMH7 237 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 PEX12O00623 359 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 STK10O94804 968 aaKnown RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 AP2A2O94973 939 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 ACRV1P26436 265 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 ZNF140P52738 457 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 DCDP81605 110 aaKnown RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 PLEKHN1Q494U1 663 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 PRR30Q53SZ7 412 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 DCAF10Q5QP82 559 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 LYPLAL1Q5VWZ2 237 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 C11orf63Q6NUN7 778 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 TLDC1Q6P9B6 456 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 SPESP1Q6UW49 350 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 MRGPREQ86SM8 312 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 CDKL3Q8IVW4 592 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 KLHDC8BQ8IXV7 354 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 GALNT16Q8N428 558 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 NAT14Q8WUY8 206 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 N4BP2L2Q92802 583 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 PTERQ96BW5 349 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 CALR3Q96L12 384 aaKnown RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 BARD1Q99728 777 aaKnown RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 AP1M1Q9BXS5 423 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 POLG2Q9UHN1 485 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 GPN3Q9UHW5 284 aaPredicted RBP13.53□□□□□ -0.24
VMP1-209ENST00000588915 SLC5A6Q9Y289 635 aa13.53□□□□□ -0.24
VMP1-209ENST00000588915 LIN7AO14910 233 aaPredicted RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 DDX3YO15523 660 aaKnown RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 LDB2O43679 373 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 KDM1AO60341 852 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 OR2B3O76000 313 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 LDLRP01130 860 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 RNF224P0DH78 156 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 PDHA2P29803 388 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 OTX2P32243 289 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 MC4RP32245 332 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 SHMT2P34897 504 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 FOLR3P41439 243 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 MAGEA1P43355 309 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 PLOD1Q02809 727 aaPredicted RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 ZRANB3Q5FWF4 1079 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 CRB2Q5IJ48 1285 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 CCDC181Q5TID7 509 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 FAM69BQ5VUD6 431 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 MLIPQ5VWP3 458 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 DENND5AQ6IQ26 1287 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 SERPINA9Q86WD7 417 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 TBC1D21Q8IYX1 336 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 C19orf47Q8N9M1 422 aaKnown RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 PHC3Q8NDX5 983 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 OR2Y1Q8NGV0 311 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 ACTL9Q8TC94 416 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 SPATA13Q96N96 652 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 GBP5Q96PP8 586 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 APOL2Q9BQE5 337 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 HEMGNQ9BXL5 484 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 ZNF552Q9H707 407 aaPredicted RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 ASF1BQ9NVP2 202 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 OR6C2Q9NZP2 312 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 LUZP4Q9P127 313 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 MAP10Q9P2G4 905 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 ERRFI1Q9UJM3 462 aaPredicted RBP13.52□□□□□ -0.25
VMP1-209ENST00000588915 SRPK3Q9UPE1 567 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 PIKFYVEQ9Y2I7 2098 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 ITPR2Q14571 2701 aa13.52□□□□□ -0.25
VMP1-209ENST00000588915 CACNA1DQ01668 2161 aa13.51□□□□□ -0.25
VMP1-209ENST00000588915 A1L4Q6 167 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms