RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	GPR34	Q9UPC5	381 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SCN5A	Q14524	2016 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	C1orf232	A0A0U1RR37	186 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TRPC5OS	A6NMA1	111 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ERI2	A8K979	691 aa	Known RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	FAM47E-STBD1	D6RA91	191 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	NME4	O00746	187 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ICMT	O60725	284 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	OAZ2	O95190	189 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TTK	P33981	857 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	DIO3	P55073	304 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CASP9	P55211	416 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SH3BP2	P78314	561 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	OTUD3	Q5T2D3	398 aa	Predicted RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MANEAL	Q5VSG8	457 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	GPR107	Q5VW38	600 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	GALNT12	Q8IXK2	581 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	PGBD5	Q8N414	524 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	IGSF8	Q969P0	613 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	FBXO32	Q969P5	355 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	USB1	Q9BQ65	265 aa	Known RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MRPL57	Q9BQC6	102 aa	Known RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	C1orf50	Q9BV19	199 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SLC2A11	Q9BYW1	496 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	AKTIP	Q9H8T0	292 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SEMA4B	Q9NPR2	832 aa	Predicted RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TREX1	Q9NSU2	369 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MARCH5	Q9NX47	278 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	DUS2	Q9NX74	493 aa	Known RBP	11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	THEG	Q9P2T0	379 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	OAZ3	Q9UMX2	235 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MYRF	Q9Y2G1	1151 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	EYS	Q5T1H1	3165 aa		11.41	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ZFC3H1	O60293	1989 aa	Known RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063		A0A0J9YYE9	177 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	KRT87P	A6NCN2	255 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	INPP4B	O15327	924 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CACNG3	O60359	315 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ECD	O95905	644 aa	Predicted RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	PEX11B	O96011	259 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CD247	P20963	164 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ITGB8	P26012	769 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CCR1	P32246	355 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ACVRL1	P37023	503 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	EMP3	P54852	163 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TAF10	Q12962	218 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	STX5	Q13190	355 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	GALNT3	Q14435	633 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SQLE	Q14534	574 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	AAK1	Q2M2I8	961 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TMEM259	Q4ZIN3	620 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	C10orf120	Q5SQS8	335 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	RAP1GAP2	Q684P5	730 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	RANBP10	Q6VN20	620 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CFAP52	Q8N1V2	620 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	PELI3	Q8N2H9	469 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ZNF454	Q8N9F8	522 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CATSPER1	Q8NEC5	780 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	OR13J1	Q8NGT2	312 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MOSPD2	Q8NHP6	518 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	PTER	Q96BW5	349 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	WAC	Q9BTA9	647 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MID1IP1	Q9NPA3	183 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MID2	Q9UJV3	735 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ANKRD6	Q9Y2G4	727 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	LINC01387	J3KSC0	135 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	PIP5K1B	O14986	540 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	KERA	O60938	352 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	H2AFY	O75367	372 aa	Known RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	BMP1	P13497	986 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TMED10	P49755	219 aa	Known RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	AIF1	P55008	147 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	DEFB103A	P81534	67 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	DSG2	Q14126	1118 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TECRL	Q5HYJ1	363 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	HECTD2	Q5U5R9	776 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	SETD3	Q86TU7	594 aa	Predicted RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TCEAL8	Q8IYN2	117 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	MAGEE2	Q8TD90	523 aa	Predicted RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TUBGCP3	Q96CW5	907 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	TEX37	Q96LM6	180 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ASB2	Q96Q27	587 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ABCC13	Q9NSE7	274 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	NDUFA13	Q9P0J0	144 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	BCAP29	Q9UHQ4	241 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	AAR2	Q9Y312	384 aa	Known RBP	11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	CBY1	Q9Y3M2	126 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063	ARL5A	Q9Y689	179 aa		11.4	□□□□□ -0.58
CDK5RAP3-231	ENST00000584063		H3BNH8	94 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	AP3D1	O14617	1153 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	TRIM24	O15164	1050 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	MMP2	P08253	660 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	RPS6KA2	Q15349	733 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ALG1L	Q6GMV1	187 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	POTEH	Q6S545	545 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	ZNF852	Q6ZMS4	543 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PIWIL4	Q7Z3Z4	852 aa	Known RBP	11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	PARP8	Q8N3A8	854 aa		11.39	□□□□□ -0.59
CDK5RAP3-231	ENST00000584063	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms