RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GJA1P17302 382 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LHCGRP22888 699 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 MYF6P23409 242 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 HLA-FP30511 346 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 GNPDA1P46926 289 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 PIK3CGP48736 1102 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 MTPNP58546 118 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 B4GALNT1Q00973 533 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CREMQ03060 361 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 PTGR1Q14914 329 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 SLC36A3Q495N2 470 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ATP13A5Q4VNC0 1218 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CDKL4Q5MAI5 379 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 DTWD1Q8N5C7 304 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 USP7Q93009 1102 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 NSMCE2Q96MF7 247 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ZBTB18Q99592 522 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 COPS8Q99627 209 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 SLC46A2Q9BY10 475 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CPEB1Q9BZB8 566 aaKnown RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 ZBP1Q9H171 429 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CLK4Q9HAZ1 481 aaKnown RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 ASIC5Q9NY37 505 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 PTTG2Q9NZH5 202 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 KLQ9UEF7 1012 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ZNF490Q9ULM2 529 aaPredicted RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 SLC8A2Q9UPR5 921 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 IGLV3-16A0A075B6K0 115 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 MANBAO00462 879 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 KCNH1O95259 989 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LDLRP01130 860 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ANXA5P08758 320 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 GNAO1P09471 354 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CCR7P32248 378 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ALDH3B2P48448 385 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 TUBA4AP68366 448 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 HMGCS1Q01581 520 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 DYNC1I2Q13409 638 aaKnown RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 ARHGEF7Q14155 803 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS53-220ENST00000576149 C1orf53Q5VUE5 145 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 C22orf39Q6P5X5 142 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LILRA6Q6PI73 481 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 B3GNT6Q6ZMB0 384 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 MBOAT1Q6ZNC8 495 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 RIMKLAQ8IXN7 391 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 TRIML2Q8N7C3 387 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 GLB1L3Q8NCI6 653 aaPredicted RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 LSM14AQ8ND56 463 aaKnown RBP9.87□□□□□ -0.83
VPS53-220ENST00000576149 VPS37AQ8NEZ2 397 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 BPIFB1Q8TDL5 484 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 OSCP1Q8WVF1 389 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 SLC13A3Q8WWT9 602 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 SEPHS2Q99611 448 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CHID1Q9BWS9 393 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 TMEM39AQ9NV64 488 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 ZNF639Q9UID6 485 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 EIF3FO00303 357 aaPredicted RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 EI24O14681 340 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ARHGEF15O94989 841 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CTSAP10619 480 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CDH1P12830 882 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 EPORP19235 508 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CD53P19397 219 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CA8P35219 290 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 PPM1AP35813 382 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 GGT5P36269 586 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 RPIAP49247 311 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 IMPG1Q17R60 797 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 PLA2G4EQ3MJ16 856 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 KCTD21Q4G0X4 260 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CACHD1Q5VU97 1274 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SDE2Q6IQ49 451 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 TTC23LQ6PF05 361 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 RFLNAQ6ZTI6 216 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 RGL4Q8IZJ4 473 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 GTF2H4Q92759 462 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ULK4Q96C45 1275 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 ZNF583Q96ND8 569 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SLC29A3Q9BZD2 475 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 DPY30Q9C005 99 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SMG9Q9H0W8 520 aaKnown RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 LRTM1Q9HBL6 345 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 TLR9Q9NR96 1032 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 VAPAQ9P0L0 249 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 RABL2BQ9UNT1 228 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CEPT1Q9Y6K0 416 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 LTBP2Q14767 1821 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CCDC160A6NGH7 325 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 BNIP3LO60238 219 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 DFNA5O60443 496 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 TULP3O75386 442 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 SEC22BO75396 215 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 FGF18O76093 207 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 CLDN9O95484 217 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 POP4O95707 220 aaKnown RBP9.86□□□□□ -0.83
VPS53-220ENST00000576149 IL6P05231 212 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 C8AP07357 584 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 C1SP09871 688 aa9.86□□□□□ -0.83
VPS53-220ENST00000576149 PFKLP17858 780 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms