RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TNFSF10P50591 281 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 IST1P53990 364 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 KRT33BQ14525 404 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 ZIC1Q15915 447 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 TCP11X2Q5H9J9 407 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 FNBP1LQ5T0N5 605 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 DET1Q7L5Y6 550 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 TRIM73Q86UV7 250 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 TGIF2LYQ8IUE0 185 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 LRRC49Q8IUZ0 686 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 FAM20CQ8IXL6 584 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 LILRA3Q8N6C8 439 aaPredicted RBP11.33□□□□□ -0.6
CLK3-222ENST00000568232 MLKLQ8NB16 471 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 ACBD4Q8NC06 268 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 PROKR1Q8TCW9 393 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 TEKT4Q8WW24 435 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 LCN9Q8WX39 176 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 RMDN2Q96LZ7 410 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 MDFIQ99750 246 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 AMACRQ9UHK6 382 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 TSR3Q9UJK0 312 aaKnown RBP11.33□□□□□ -0.6
CLK3-222ENST00000568232 DNMT3AQ9Y6K1 912 aaPredicted RBP11.33□□□□□ -0.6
CLK3-222ENST00000568232 AP1M2Q9Y6Q5 423 aa11.33□□□□□ -0.6
CLK3-222ENST00000568232 PCM1Q15154 2024 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 FAM221AA4D161 298 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 TMEM200CA6NKL6 621 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 MATN2O00339 956 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 ATP1A3P13637 1013 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 ITGAXP20702 1163 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 DNAJA1P31689 397 aaKnown RBP11.32□□□□□ -0.6
CLK3-222ENST00000568232 CASP6P55212 293 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 RBPJQ06330 500 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 PCSK7Q16549 785 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 IFI16Q16666 785 aaKnown RBP11.32□□□□□ -0.6
CLK3-222ENST00000568232 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.32□□□□□ -0.6
CLK3-222ENST00000568232 TUBB8Q3ZCM7 444 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 BOLA3Q53S33 107 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 NCBP2-AS2Q69YL0 99 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 TIGD7Q6NT04 549 aaPredicted RBP11.32□□□□□ -0.6
CLK3-222ENST00000568232 CNTD1Q8N815 330 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 OR11G2Q8NGC1 345 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 NACC2Q96BF6 587 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 XKR8Q9H6D3 395 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 SOX17Q9H6I2 414 aaPredicted RBP11.32□□□□□ -0.6
CLK3-222ENST00000568232 IL26Q9NPH9 171 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 TXLNGQ9NUQ3 528 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 ABI3Q9P2A4 366 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 COLEC10Q9Y6Z7 277 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 DOCK10Q96BY6 2186 aa11.32□□□□□ -0.6
CLK3-222ENST00000568232 SEC16AO15027 2179 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 TRAV17A0A0B4J275 112 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 DYTNA2CJ06 578 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 MGAT4DA6NG13 374 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 KCNK1O00180 336 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 FANCGO15287 622 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ZSCAN9O15535 394 aaPredicted RBP11.31□□□□□ -0.6
CLK3-222ENST00000568232 RASAL1O95294 804 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 SLC35G4P0C7Q5 338 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ALAS2P22557 587 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 PCK1P35558 622 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 PMP22Q01453 160 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 INAQ16352 499 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 NKG7Q16617 165 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 CCDC122Q5T0U0 273 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 GPRC6AQ5T6X5 926 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 DAAM2Q86T65 1068 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 NT5DC3Q86UY8 548 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ADGRF3Q8IZF5 1079 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 C19orf47Q8N9M1 422 aaKnown RBP11.31□□□□□ -0.6
CLK3-222ENST00000568232 ACVR1CQ8NER5 493 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.31□□□□□ -0.6
CLK3-222ENST00000568232 TSGA13Q96PP4 275 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 FERD3LQ96RJ6 166 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 SPSB2Q99619 263 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 TREX2Q9BQ50 279 aaPredicted RBP11.31□□□□□ -0.6
CLK3-222ENST00000568232 CEP41Q9BYV8 373 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ZNF160Q9HCG1 818 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 IRAK4Q9NWZ3 460 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ACTR10Q9NZ32 417 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 PTGFRNQ9P2B2 879 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ACSL5Q9ULC5 683 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 MEMO1Q9Y316 297 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 ACANP16112 2415 aa11.31□□□□□ -0.6
CLK3-222ENST00000568232 NUP210LQ5VU65 1888 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 C2orf74A8MZ97 194 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 ZNHIT1O43257 154 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 CRYABP02511 175 aaKnown RBP11.3□□□□□ -0.6
CLK3-222ENST00000568232 NDUFS1P28331 727 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 PPP2R2AP63151 447 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 FOXD4Q12950 439 aaPredicted RBP11.3□□□□□ -0.6
CLK3-222ENST00000568232 ZBTB17Q13105 803 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 KRT81Q14533 505 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 PAFAH1B3Q15102 231 aaKnown RBP11.3□□□□□ -0.6
CLK3-222ENST00000568232 NOMO1Q15155 1222 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 RBBP7Q16576 425 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 DPCR1Q3MIW9 517 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 LDLRAP1Q5SW96 308 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 FAM151BQ6UXP7 276 aa11.3□□□□□ -0.6
CLK3-222ENST00000568232 Q71RC1 249 aaPredicted RBP11.3□□□□□ -0.6
CLK3-222ENST00000568232 COX15Q7KZN9 410 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms