RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 BDKRB1P46663 353 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 PPM1FP49593 454 aaPredicted RBP19.01■□□□□ 0.63
CLN3-225ENST00000566824 PLCL1Q15111 1095 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 KLHL38Q2WGJ6 581 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 PAQR3Q6TCH7 311 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 CYHR1Q6ZMK1 362 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 CACTIN-AS1Q8N1I8 211 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 PPM1NQ8N819 430 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 RCBTB1Q8NDN9 531 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 OR4E2Q8NGC2 313 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 GABPB2Q8TAK5 448 aaPredicted RBP19.01■□□□□ 0.63
CLN3-225ENST00000566824 UHMK1Q8TAS1 419 aaKnown RBP19.01■□□□□ 0.63
CLN3-225ENST00000566824 INPP5DQ92835 1189 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 CCDC74BQ96LY2 380 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 MVB12BQ9H7P6 319 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 ANGPTL2Q9UKU9 493 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 ICKQ9UPZ9 632 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 TDRKHQ9Y2W6 561 aaKnown RBP19.01■□□□□ 0.63
CLN3-225ENST00000566824 MSRB2Q9Y3D2 182 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 COLEC10Q9Y6Z7 277 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 OR6C74A6NCV1 312 aa19■□□□□ 0.63
CLN3-225ENST00000566824 KIF1CO43896 1103 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 VPS26AO75436 327 aa19■□□□□ 0.63
CLN3-225ENST00000566824 ACSL3O95573 720 aa19■□□□□ 0.63
CLN3-225ENST00000566824 AMD1P17707 334 aa19■□□□□ 0.63
CLN3-225ENST00000566824 FDXRP22570 491 aa19■□□□□ 0.63
CLN3-225ENST00000566824 LIMK2P53671 638 aa19■□□□□ 0.63
CLN3-225ENST00000566824 INHBCP55103 352 aa19■□□□□ 0.63
CLN3-225ENST00000566824 ZNF460Q14592 562 aa19■□□□□ 0.63
CLN3-225ENST00000566824 C16orf72Q14CZ0 275 aa19■□□□□ 0.63
CLN3-225ENST00000566824 SNAP47Q5SQN1 464 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TMEM207Q6UWW9 146 aa19■□□□□ 0.63
CLN3-225ENST00000566824 PIWIL4Q7Z3Z4 852 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 CTAGE3PQ8IX95 158 aa19■□□□□ 0.63
CLN3-225ENST00000566824 OR5K2Q8NHB8 316 aa19■□□□□ 0.63
CLN3-225ENST00000566824 EEF1AKMT1Q8WVE0 214 aa19■□□□□ 0.63
CLN3-225ENST00000566824 SKA2Q8WVK7 121 aaPredicted RBP19■□□□□ 0.63
CLN3-225ENST00000566824 ZFPM2Q8WW38 1151 aa19■□□□□ 0.63
CLN3-225ENST00000566824 MRRFQ96E11 262 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 ELMO2Q96JJ3 720 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TXLNGYQ9BZA5 131 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TRIT1Q9H3H1 467 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 KLHL3Q9UH77 587 aa19■□□□□ 0.63
CLN3-225ENST00000566824 VWA7Q9Y334 891 aa19■□□□□ 0.63
CLN3-225ENST00000566824 IGF2RP11717 2491 aa19■□□□□ 0.63
CLN3-225ENST00000566824 ADAMTS20P59510 1910 aa19■□□□□ 0.63
CLN3-225ENST00000566824 FAM95CA0A1B0GW59 222 aa19■□□□□ 0.63
CLN3-225ENST00000566824 A8MU76 341 aa19■□□□□ 0.63
CLN3-225ENST00000566824 BTN3A3O00478 584 aa19■□□□□ 0.63
CLN3-225ENST00000566824 MATN4O95460 622 aa19■□□□□ 0.63
CLN3-225ENST00000566824 SAT1P21673 171 aa19■□□□□ 0.63
CLN3-225ENST00000566824 NDUFS1P28331 727 aa19■□□□□ 0.63
CLN3-225ENST00000566824 ATP5DP30049 168 aa19■□□□□ 0.63
CLN3-225ENST00000566824 STX2P32856 288 aa19■□□□□ 0.63
CLN3-225ENST00000566824 CAPZBP47756 277 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TAS2R39P59534 338 aa19■□□□□ 0.63
CLN3-225ENST00000566824 PHF19Q5T6S3 580 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TMEM71Q6P5X7 295 aa19■□□□□ 0.63
CLN3-225ENST00000566824 WDR74Q6RFH5 385 aaPredicted RBP19■□□□□ 0.63
CLN3-225ENST00000566824 UNC5DQ6UXZ4 953 aa19■□□□□ 0.63
CLN3-225ENST00000566824 CEP97Q8IW35 865 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TBC1D21Q8IYX1 336 aa19■□□□□ 0.63
CLN3-225ENST00000566824 OR4D9Q8NGE8 314 aa19■□□□□ 0.63
CLN3-225ENST00000566824 LCN9Q8WX39 176 aa19■□□□□ 0.63
CLN3-225ENST00000566824 VPS39Q96JC1 886 aa19■□□□□ 0.63
CLN3-225ENST00000566824 PPM1MQ96MI6 270 aa19■□□□□ 0.63
CLN3-225ENST00000566824 IL17FQ96PD4 163 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TGM7Q96PF1 710 aa19■□□□□ 0.63
CLN3-225ENST00000566824 MENTQ9BUN1 341 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TMEM121BQ9BXQ6 578 aaPredicted RBP19■□□□□ 0.63
CLN3-225ENST00000566824 RHOJQ9H4E5 214 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TFB2MQ9H5Q4 396 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 CAB39LQ9H9S4 337 aa19■□□□□ 0.63
CLN3-225ENST00000566824 PDP2Q9P2J9 529 aa19■□□□□ 0.63
CLN3-225ENST00000566824 KLHL42Q9P2K6 505 aa19■□□□□ 0.63
CLN3-225ENST00000566824 TRMT6Q9UJA5 497 aaKnown RBP19■□□□□ 0.63
CLN3-225ENST00000566824 TRABD2BA6NFA1 517 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 BTN3A1O00481 513 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 CAPN5O15484 640 aaPredicted RBP18.99■□□□□ 0.63
CLN3-225ENST00000566824 SPAG6O75602 509 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 C1orf105O95561 183 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 TSPAN12O95859 305 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 THRAP10827 490 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 HGFP14210 728 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 CCKBRP32239 447 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 GMPRP36959 345 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 FAM45BPQ6NSW5 357 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 RASGRP3Q8IV61 690 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 FAM45AQ8TCE6 357 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 CDKL2Q92772 493 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 RBBP8Q99708 897 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 ZMYND15Q9H091 742 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 TSPYL1Q9H0U9 437 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 EPB41L4BQ9H329 900 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 NSMCE4AQ9NXX6 385 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 TAS2R13Q9NYV9 303 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 IKZF3Q9UKT9 509 aa18.99■□□□□ 0.63
CLN3-225ENST00000566824 CORO1CQ9ULV4 474 aaPredicted RBP18.99■□□□□ 0.63
CLN3-225ENST00000566824 MN1Q10571 1320 aaPredicted RBP18.98■□□□□ 0.63
CLN3-225ENST00000566824 OR5K3A6NET4 321 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms