RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 OR4E2Q8NGC2 313 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 JPH3Q8WXH2 748 aaPredicted RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 SIGLEC10Q96LC7 697 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 NAT9Q9BTE0 207 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 P2RY12Q9H244 342 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 INTS10Q9NVR2 710 aaKnown RBP13.03□□□□□ -0.32
CLK3-216ENST00000564468 WDR70Q9NW82 654 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 FOXJ2Q9P0K8 574 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
CLK3-216ENST00000564468 GPC4O75487 556 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 TTC4O95801 387 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 ESR1P03372 595 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 SPTBP11277 2137 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 ITGB6P18564 788 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 NELFEP18615 380 aaKnown RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 ARNTP27540 789 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 AOAHP28039 575 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 ACADLP28330 430 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 CCR7P32248 378 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 SHMT2P34897 504 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 PTGIRP43119 386 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 EIF3BP55884 814 aaKnown RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 ETF1P62495 437 aaKnown RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 CXADRP78310 365 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 ACY1Q03154 408 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 VAC14Q08AM6 782 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 MORF4L2Q15014 288 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 LONRF1Q17RB8 773 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 KCTD19Q17RG1 926 aaPredicted RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 MANEAQ5SRI9 462 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 PLEKHS1Q5SXH7 462 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 TMTC4Q5T4D3 741 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 TTC23LQ6PF05 361 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 CCDC81Q6ZN84 652 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 OTOAQ7RTW8 1153 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 AMIGO1Q86WK6 493 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 ZFAND4Q86XD8 727 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 DTX1Q86Y01 620 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 CILP2Q8IUL8 1156 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 SLC22A15Q8IZD6 547 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 SIDT2Q8NBJ9 832 aaKnown RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 OR52E1Q8NGJ3 308 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 OR5K2Q8NHB8 316 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 STAMBPL1Q96FJ0 436 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 MAP3K3Q99759 626 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 HGH1Q9BTY7 390 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 PDE7BQ9NP56 450 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 C1GALT1Q9NS00 363 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 SIDT1Q9NXL6 827 aaKnown RBP13.02□□□□□ -0.33
CLK3-216ENST00000564468 SEC16AO15027 2179 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 TENM4Q6N022 2769 aa13.02□□□□□ -0.33
CLK3-216ENST00000564468 IGHV5-51A0A0C4DH38 117 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 GSAPA4D1B5 854 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 C2orf74A8MZ97 194 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 BHMG1C9JSJ3 638 aaPredicted RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 GOLGA8KD6RF30 607 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 GOLGA8TH3BQL2 631 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 KIF1CO43896 1103 aaKnown RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 SLCO2B1O94956 709 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 ZBTB11O95625 1053 aaPredicted RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 POLR2CP19387 275 aaPredicted RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 CDH3P22223 829 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 HSD11B2P80365 405 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 PRKG2Q13237 762 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 TAF1BQ53T94 588 aaPredicted RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 UNC5DQ6UXZ4 953 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 MAATS1Q7Z4T9 603 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 PDIK1LQ8N165 341 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 KRT222Q8N1A0 295 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 IL22RA1Q8N6P7 574 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 ZSCAN1Q8NBB4 408 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLK3-216ENST00000564468 OR5AR1Q8NGP9 310 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 LPGAT1Q92604 370 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 SLC41A2Q96JW4 573 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 FOPNLQ96NB1 174 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 FCRL4Q96PJ5 515 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 OR6C1Q96RD1 312 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 FAM167BQ9BTA0 163 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 CCDC68Q9H2F9 335 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 C20orf96Q9NUD7 363 aaPredicted RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 TDRKHQ9Y2W6 561 aaKnown RBP13.01□□□□□ -0.33
CLK3-216ENST00000564468 FAM169AQ9Y6X4 670 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 ANKRD12Q6UB98 2062 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 SPTA1P02549 2419 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 MGAQ8IWI9 3026 aa13.01□□□□□ -0.33
CLK3-216ENST00000564468 ZCWPW2A0A1B0GU75 182 aa13□□□□□ -0.33
CLK3-216ENST00000564468 PIPSLA2A3N6 862 aa13□□□□□ -0.33
CLK3-216ENST00000564468 IQCF5A8MTL0 148 aa13□□□□□ -0.33
CLK3-216ENST00000564468 E5RI56 91 aa13□□□□□ -0.33
CLK3-216ENST00000564468 K7ENP7 123 aa13□□□□□ -0.33
CLK3-216ENST00000564468 ERVH48-1M5A8F1 160 aa13□□□□□ -0.33
CLK3-216ENST00000564468 FGF5P12034 268 aa13□□□□□ -0.33
CLK3-216ENST00000564468 PKMP14618 531 aaKnown RBP13□□□□□ -0.33
CLK3-216ENST00000564468 PGAM1P18669 254 aa13□□□□□ -0.33
CLK3-216ENST00000564468 CHRM3P20309 590 aa13□□□□□ -0.33
CLK3-216ENST00000564468 MAP4P27816 1152 aaKnown RBP13□□□□□ -0.33
CLK3-216ENST00000564468 FMO4P31512 558 aa13□□□□□ -0.33
CLK3-216ENST00000564468 CSE1LP55060 971 aaKnown RBP13□□□□□ -0.33
CLK3-216ENST00000564468 SPANXN3Q5MJ09 141 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms