RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 RPUSD3Q6P087 351 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 MRPL14Q6P1L8 145 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CEP97Q8IW35 865 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 MAP7D3Q8IWC1 876 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CFAP206Q8IYR0 622 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF655Q8N720 491 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 DDHD1Q8NEL9 900 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 OR2L2Q8NH16 312 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 NAT14Q8WUY8 206 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 NR4A3Q92570 626 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 IMP4Q96G21 291 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 RBM41Q96IZ5 413 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 VPS50Q96JG6 964 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 BTBD6Q96KE9 485 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 RMDN2Q96LZ7 410 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ERGIC2Q96RQ1 377 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 NDC1Q9BTX1 674 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 PITPNM3Q9BZ71 974 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 HAUS4Q9H6D7 363 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 FANCLQ9NW38 375 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 IP6K2Q9UHH9 426 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 MAP1AP78559 2803 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 DYTNA2CJ06 578 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 KLHL33A6NCF5 533 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 LRRC53A6NM62 1247 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 IFRD1O00458 451 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 DDX3XO00571 662 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 BUD23O43709 281 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 KLHL18O94889 574 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 UQCRHP07919 91 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 PYGMP11217 842 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 CA7P43166 264 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TNNT3P45378 269 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TDGF1P3P51864 188 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SMSP52788 366 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 IFI35P80217 286 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TLE4Q04727 773 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SRSF11Q05519 484 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 RBPJQ06330 500 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 PPIDQ08752 370 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SLC10A2Q12908 348 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 MFAP5Q13361 173 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 PDK2Q15119 407 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 RBBP7Q16576 425 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TUBB8Q3ZCM7 444 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF324BQ6AW86 544 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TLDC1Q6P9B6 456 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SARM1Q6SZW1 724 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SPESP1Q6UW49 350 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF571Q7Z3V5 609 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 DAAM2Q86T65 1068 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TRIM73Q86UV7 250 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 AMIGO1Q86WK6 493 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 LILRA3Q8N6C8 439 aaPredicted RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 C19orf47Q8N9M1 422 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 PHC3Q8NDX5 983 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SPATA22Q8NHS9 363 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 FAM71BQ8TC56 605 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF398Q8TD17 642 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 NACC2Q96BF6 587 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 MTFMTQ96DP5 389 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 TAAR6Q96RI8 345 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 LMF1Q96S06 567 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 NRTNQ99748 197 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF670Q9BS34 389 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 CCM2Q9BSQ5 444 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SLC25A51Q9H1U9 297 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 XKR8Q9H6D3 395 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 FAM60AQ9NP50 221 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ACTR10Q9NZ32 417 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 UBP1Q9NZI7 540 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 SEC14L3Q9UDX4 400 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 LIMA1Q9UHB6 759 aaKnown RBP7.06□□□□□ -1.28
VPS4A-203ENST00000564399 ANAPC7Q9UJX3 599 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 NEU2Q9Y3R4 380 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 PKP3Q9Y446 797 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 HEY1Q9Y5J3 304 aa7.06□□□□□ -1.28
VPS4A-203ENST00000564399 RTTNQ86VV8 2226 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 SCN2AQ99250 2005 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TRAV17A0A0B4J275 112 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 A0A1B0GTL3 188 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 C19orf84I3L1E1 186 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 MYO1FO00160 1098 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 SOCS6O14544 535 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 HCRTR1O43613 425 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 CRYABP02511 175 aaKnown RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 CTSBP07858 339 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 PIM1P11309 404 aaPredicted RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 KIR3DL1P43629 444 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 ARSEP51690 589 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TMPRSS15P98073 1019 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 KLHL30Q0D2K2 578 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 PRKG2Q13237 762 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 NOMO1Q15155 1222 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 FAAH2Q6GMR7 532 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF449Q6P9G9 518 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 KIRREL2Q6UWL6 708 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms