RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 MRPL10Q7Z7H8 261 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 HIPK1Q86Z02 1210 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 BRI3BPQ8WY22 251 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 FBXO32Q969P5 355 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 TRIT1Q9H3H1 467 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 NECTIN3Q9NQS3 549 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 POLE4Q9NR33 117 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 DCAF13Q9NV06 445 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 SCN3BQ9NY72 215 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 SLC25A37Q9NYZ2 338 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 ZNF229Q9UJW7 825 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 TPRKBQ9Y3C4 175 aa13.71□□□□□ -0.21
VPS9D1-202ENST00000561976 ARVCFO00192 962 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 STX7O15400 261 aaKnown RBP13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 RGS14O43566 566 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 PGRP06401 933 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 IGFBP5P24593 272 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 HSPA7P48741 367 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 MAPKAPK2P49137 400 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 PURAQ00577 322 aaKnown RBP13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 HMGCS1Q01581 520 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 LAPTM4AQ15012 233 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 ACOX1Q15067 660 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 LGI2Q8N0V4 545 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 LIX1Q8N485 282 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 KRTCAP2Q8N6L1 136 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 SETD9Q8NE22 299 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 KLHDC9Q8NEP7 349 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 CLHC1Q8NHS4 586 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 FAM120BQ96EK7 910 aaKnown RBP13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 OR52E6Q96RD3 313 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 ASPSCR1Q9BZE9 553 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 PDFQ9HBH1 243 aa13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 TMEFF2Q9UIK5 374 aaPredicted RBP13.71□□□□□ -0.22
VPS9D1-202ENST00000561976 A0A0U1RQS6 177 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 SLC16A6O15403 523 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 SEC22BO75396 215 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PARNO95453 639 aaKnown RBP13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 TYMPP19971 482 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 IL18R1Q13478 541 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 GTF2H3Q13889 308 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 INAVAQ3KP66 663 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 CACHD1Q5VU97 1274 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 DSG4Q86SJ6 1040 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 SCAIQ8N9R8 606 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 NETO1Q8TDF5 533 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 KCNJ9Q92806 393 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 MS4A4AQ96JQ5 239 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PSD2Q9BQI7 771 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 MGME1Q9BQP7 344 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 SCUBE2Q9NQ36 999 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PCDHGC4Q9Y5F7 938 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PTPRDP23468 1912 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 INSIG1O15503 277 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 GPR39O43194 453 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 FADS2O95864 444 aaKnown RBP13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 GSTT2P0CG29 244 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 GSTT2BP0CG30 244 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 TGM1P22735 817 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 NCS1P62166 190 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PTPRRQ15256 657 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PCBP2Q15366 365 aaKnown RBP eCLIP13.7□□□□□ -0.226e-6■■■■□ 19.3
VPS9D1-202ENST00000561976 CCL14Q16627 93 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 RUNDC3AQ59EK9 446 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 AGAP7PQ5VUJ5 663 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PLEKHG7Q6ZR37 379 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PAGE2Q7Z2X7 111 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 SLC22A16Q86VW1 577 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 MSRB3Q8IXL7 192 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 MFSD4AQ8N468 514 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 OR6Q1Q8NGQ2 317 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 EGFL8Q99944 293 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 NSUN3Q9H649 340 aaKnown RBP13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 RMI1Q9H9A7 625 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 UBA2Q9UBT2 640 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 KLQ9UEF7 1012 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 FBXO10Q9UK96 956 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 PADI3Q9ULW8 664 aa13.7□□□□□ -0.22
VPS9D1-202ENST00000561976 NLRC5Q86WI3 1866 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 MYO1GB0I1T2 1018 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 RECQL5O94762 991 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 SEC24AO95486 1093 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 IL6P05231 212 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 ITGB6P18564 788 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 TACR2P21452 398 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 ST13P50502 369 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 MAD2L1Q13257 205 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 B3GNT8Q7Z7M8 397 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 GPR149Q86SP6 731 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 PLD3Q8IV08 490 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 ZNF540Q8NDQ6 660 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 DACH2Q96NX9 599 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 BCL7BQ9BQE9 202 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 CORO1BQ9BR76 489 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 ALOXE3Q9BYJ1 711 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 FARSBQ9NSD9 589 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 RNF181Q9P0P0 153 aa13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 PNMA8BQ9ULN7 279 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 RBMX2Q9Y388 322 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-202ENST00000561976 PCDHB14Q9Y5E9 798 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms