RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GPX6P59796 221 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CFHR1Q03591 330 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 PRKAA1Q13131 559 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 PHF19Q5T6S3 580 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 TTC23LQ6PF05 361 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 NAPRTQ6XQN6 538 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 B3GNT8Q7Z7M8 397 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 VRK3Q8IV63 474 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 OR52E1Q8NGJ3 308 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 OR5AR1Q8NGP9 310 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CD200R1Q8TD46 325 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 MAGEC3Q8TD91 643 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 LCN9Q8WX39 176 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 NCSTNQ92542 709 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 RSC1A1Q92681 617 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 INPP5DQ92835 1189 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 ATXN7L3BQ96GX2 97 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CCDC74BQ96LY2 380 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 HGH1Q9BTY7 390 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 RAB11FIP5Q9BXF6 653 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 SEMA6CQ9H3T2 930 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 RHOJQ9H4E5 214 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 POLR1BQ9H9Y6 1135 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 LRRC4CQ9HCJ2 640 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 TXNDC16Q9P2K2 825 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 TRMT6Q9UJA5 497 aaKnown RBP12.65□□□□□ -0.38
NEDD8-208ENST00000560427 CEP295Q9C0D2 2601 aa12.65□□□□□ -0.38
NEDD8-208ENST00000560427 TRABD2BA6NFA1 517 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 CAPN5O15484 640 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 MATN4O95460 622 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 MPC1LP0DKB6 136 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 HOXB3P14651 431 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 TYRP1P17643 537 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 RGS4P49798 205 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 SLMAPQ14BN4 828 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 ARMC6Q6NXE6 501 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 UNQ6494/PRO21346Q6UXR6 183 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 ZNF574Q6ZN55 896 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 CAPN12Q6ZSI9 719 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 RAB11FIP2Q7L804 512 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 TMPRSS9Q7Z410 1059 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 PRSS42Q7Z5A4 293 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 ARHGAP22Q7Z5H3 698 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 STRA8Q7Z7C7 330 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 ZC3HC1Q86WB0 502 aaKnown RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 AMIGO1Q86WK6 493 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 RAB42Q8N4Z0 105 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 SIDT2Q8NBJ9 832 aaKnown RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 AGBL5Q8NDL9 886 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 PHC3Q8NDX5 983 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 GIMAP7Q8NHV1 300 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 SKA2Q8WVK7 121 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-208ENST00000560427 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.64□□□□□ -0.393e-6■■■□□ 18.4
NEDD8-208ENST00000560427 RAD51AP1Q96B01 352 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 NDNQ99608 321 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 GPR21Q99679 349 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 CPNE1Q99829 537 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 MCMBPQ9BTE3 642 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 B3GNT4Q9C0J1 378 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 SRMSQ9H3Y6 488 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 OR6C2Q9NZP2 312 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 VWA7Q9Y334 891 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 LOXL2Q9Y4K0 774 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 PSAT1Q9Y617 370 aa12.64□□□□□ -0.39
NEDD8-208ENST00000560427 PLD2O14939 933 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 C1orf105O95561 183 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 C1QAP02745 245 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 CATP04040 527 aaKnown RBP12.63□□□□□ -0.39
NEDD8-208ENST00000560427 ITGA2BP08514 1039 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 F7P08709 466 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-208ENST00000560427 RHOXF2BP0C7M4 288 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FDXRP22570 491 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 GP5P40197 560 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 RAB28P51157 221 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 ACSBG2Q5FVE4 666 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 HECTD2Q5U5R9 776 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 KMT5CQ86Y97 462 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FBXO39Q8N4B4 442 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 GPATCH11Q8N954 259 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FBXO15Q8NCQ5 510 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-208ENST00000560427 UBXN4Q92575 508 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FAM136AQ96C01 138 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 VPS39Q96JC1 886 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 RHOXF2Q9BQY4 288 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FUT8Q9BYC5 575 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 TWSG1Q9GZX9 223 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 POPDC3Q9HBV1 291 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 HRASLS2Q9NWW9 162 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 TMEM9Q9P0T7 183 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 SPATA7Q9P0W8 599 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 SEMA5BQ9P283 1151 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 SLC17A6Q9P2U8 582 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 SATB2Q9UPW6 733 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 ICKQ9UPZ9 632 aa12.63□□□□□ -0.39
NEDD8-208ENST00000560427 FAM95CA0A1B0GW59 222 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 OR6C74A6NCV1 312 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 TLCD2A6NGC4 264 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 C2orf74A8MZ97 194 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 PSIP1O75475 530 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 TNFRSF8P28908 595 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms