RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 RAP1GDS1P52306 607 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 CDK3Q00526 305 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 ABRQ12979 859 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 FGL2Q14314 439 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 MAP7D1Q3KQU3 841 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 FBXO43Q4G163 708 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 TMEM259Q4ZIN3 620 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 IER5LQ5T953 404 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 KIAA1161Q6NSJ0 714 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 C11orf96Q7Z7L8 435 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 HEATR4Q86WZ0 1026 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 SNX32Q86XE0 403 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 PARP9Q8IXQ6 854 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 CFAP206Q8IYR0 622 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 ARHGAP24Q8N264 748 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 FBXO15Q8NCQ5 510 aaPredicted RBP12.39□□□□□ -0.43
USP3-213ENST00000559711 OR2L2Q8NH16 312 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 HMGCLL1Q8TB92 370 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 TUBGCP3Q96CW5 907 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 PIKFYVEQ9Y2I7 2098 aa12.39□□□□□ -0.43
USP3-213ENST00000559711 MGAT4DA6NG13 374 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 H3BM21 787 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 PSMD12O00232 456 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 CATP04040 527 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 PCCBP05166 539 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 HGFP14210 728 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 EZRP15311 586 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 EPORP19235 508 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 MAP4P27816 1152 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 MRPL19P49406 292 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 MXRA7P84157 204 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 GRB7Q14451 532 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 PTCHD3Q3KNS1 767 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 NEK5Q6P3R8 708 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 USP30Q70CQ3 517 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SPATA19Q7Z5L4 167 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 KLHDC8AQ8IYD2 350 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 DCBLD1Q8N8Z6 715 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 TP53I13Q8NBR0 393 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 OR14C36Q8NHC7 312 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 HM13Q8TCT9 377 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 GANCQ8TET4 914 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 CCDC138Q96M89 665 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 FOPNLQ96NB1 174 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SLC6A17Q9H1V8 727 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 DPEP2Q9H4A9 486 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 PREBQ9HCU5 417 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 MBNL1Q9NR56 388 aaKnown RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 FAM8A1Q9UBU6 413 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 TRPS1Q9UHF7 1281 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 FZD4Q9ULV1 537 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 COLQQ9Y215 455 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 TMEM98Q9Y2Y6 226 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 DNMT3AQ9Y6K1 912 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 COL4A2P08572 1712 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 TICRRQ7Z2Z1 1910 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 A8MUI8 341 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 MEI4A8MW99 385 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 LOC730098B7Z3J9 87 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 GPR89AB7ZAQ6 455 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 WDR47O94967 919 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 PAK4O96013 591 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 ASGR2P07307 311 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 GPR89BP0CG08 455 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 GPX3P22352 226 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 PBLDP30039 288 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 ADPRHP54922 357 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SLC25A3Q00325 362 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 RPA4Q13156 261 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SGCGQ13326 291 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 CCINQ13939 588 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 INPP5AQ14642 412 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 TTC31Q49AM3 519 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 TCHHL1Q5QJ38 904 aaPredicted RBP12.38□□□□□ -0.43
USP3-213ENST00000559711 WASHC2DQ5SRD0 308 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 Q6ZSR9 355 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 KBTBD6Q86V97 674 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 ATL1Q8WXF7 558 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SIPA1Q96FS4 1042 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 FAM161BQ96MY7 647 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 LGR4Q9BXB1 951 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 SLC17A9Q9BYT1 436 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 RIC8BQ9NVN3 520 aa12.38□□□□□ -0.43
USP3-213ENST00000559711 A0A1W2PQU0 124 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 SOX1O00570 391 aaPredicted RBP12.37□□□□□ -0.43
USP3-213ENST00000559711 RNGTTO60942 597 aaKnown RBP12.37□□□□□ -0.43
USP3-213ENST00000559711 WFS1O76024 890 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 CLDN9O95484 217 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 C1orf105O95561 183 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 ITGAXP20702 1163 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 HMOX2P30519 316 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 SFSWAPQ12872 951 aaKnown RBP12.37□□□□□ -0.43
USP3-213ENST00000559711 GRIK2Q13002 908 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 CUL3Q13618 768 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 FASTKQ14296 549 aaKnown RBP12.37□□□□□ -0.43
USP3-213ENST00000559711 IRF4Q15306 451 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 MAPRE2Q15555 327 aa12.37□□□□□ -0.43
USP3-213ENST00000559711 SMAD2Q15796 467 aaKnown RBP12.37□□□□□ -0.43
USP3-213ENST00000559711 GSTA3Q16772 222 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms