RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ARHGAP15Q53QZ3 475 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 NAIF1Q69YI7 327 aaPredicted RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 TMC5Q6UXY8 1006 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 LIX1Q8N485 282 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ELMO1Q92556 727 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ISG20Q96AZ6 181 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 CPEB1Q9BZB8 566 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 FAM83DQ9H4H8 585 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 PRM3Q9NNZ6 103 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 LEF1Q9UJU2 399 aaPredicted RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 CCL27Q9Y4X3 112 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ARHGAP10A1A4S6 786 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 FAM234BA2RU67 622 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 FADS2P1A8MWK0 482 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 WDR47O94967 919 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 OR56A5P0C7T3 313 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 AOAHP28039 575 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 PREPP48147 710 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 EMX2Q04743 252 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 PRKCQQ04759 706 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 SF1Q15637 639 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 PTCHD3Q3KNS1 767 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 PDCD4Q53EL6 469 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 TMEM240Q5SV17 173 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 LYPLAL1Q5VWZ2 237 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ELMSAN1Q6PJG2 1045 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 SUSD1Q6UWL2 747 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ZBTB49Q6ZSB9 765 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 METTL3Q86U44 580 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 TRIM74Q86UV6 250 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 ZFAND4Q86XD8 727 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 BTBD9Q96Q07 612 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 PRPF18Q99633 342 aaKnown RBP10.39□□□□□ -0.75
CUX1-217ENST00000558836 RAD9AQ99638 391 aa10.39□□□□□ -0.75
CUX1-217ENST00000558836 OTOL1A6NHN0 477 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 WASH3PC4AMC7 463 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PLOD2O00469 737 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 KPNA3O00505 521 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 ANKRD28O15084 1053 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 DFNA5O60443 496 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 OR6B1O95007 311 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 LRATO95237 230 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PDYNP01213 254 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 TIMP2P16035 220 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PBLDP30039 288 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 ZNF77Q15935 545 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 CCSMST1Q4G0I0 132 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 SPANXN4Q5MJ08 99 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 NEK5Q6P3R8 708 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 SATL1Q86VE3 508 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ANKRD46Q86W74 232 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 FRS2Q8WU20 508 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 RSPRY1Q96DX4 576 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 MRGPRX3Q96LB0 322 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ZNF641Q96N77 438 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 HEPHQ9BQS7 1158 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 RPF2Q9H7B2 306 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 PFDN4Q9NQP4 134 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ZIM2Q9NZV7 527 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 VAPAQ9P0L0 249 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 MRPS23Q9Y3D9 190 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 MTCL1Q9Y4B5 1905 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 PRAMEF4O60810 478 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PCNAP12004 261 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 HSD17B1P14061 328 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ETS2P15036 469 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 XPAP23025 273 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 CTSCP53634 463 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 POLR2LP62875 67 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 MYBPC1Q00872 1141 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PLOD1Q02809 727 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 GTDC1Q4AE62 458 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PRAMEF9Q5VWM5 478 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 DLEU7Q6UYE1 221 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 CACUL1Q86Y37 369 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 CBR4Q8N4T8 237 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 TBCDQ9BTW9 1192 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ACPTQ9BZG2 426 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 IKZF5Q9H5V7 419 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 WBP1LQ9NX94 342 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PDP2Q9P2J9 529 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 TMCO1Q9UM00 188 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 DLGAP4Q9Y2H0 992 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PPIL1Q9Y3C6 166 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 IRAK3Q9Y616 596 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 MANBAO00462 879 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 RGS14O43566 566 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 DENRO43583 198 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 CLIC3O95833 236 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 GSNP06396 782 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 HIST1H2AGP0C0S8 130 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 HIST1H2ADP20671 130 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PSMA4P25789 261 aaKnown RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 SLC6A11P48066 632 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 POLE2P56282 527 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 FPGSQ05932 587 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 DHCR24Q15392 516 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 FAM109BQ6ICB4 259 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 PRMT9Q6P2P2 845 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms