RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 ZDHHC8Q9ULC8 765 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 MTO1Q9Y2Z2 717 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 DAAM1Q9Y4D1 1078 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PAXBP1Q9Y5B6 917 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.26□□□□□ -1.73
SPG11-211ENST00000558561 FADS3Q9Y5Q0 445 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 NCOR2Q9Y618 2525 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ARHGEF17Q96PE2 2063 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 CENPVL1A0A0U1RR11 272 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 A0A1W2PPC4 97 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 TYW5A2RUC4 315 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 CAPN8A6NHC0 703 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 TMEM200CA6NKL6 621 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 MARCH11A6NNE9 402 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 MEI4A8MW99 385 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 F5H423 210 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 MYO1FO00160 1098 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 NPC1O15118 1278 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PLRG1O43660 514 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 PRPSAP2O60256 369 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PRAMEF11O60813 436 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 RAMP2O60895 175 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SDC3O75056 442 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ERN1O75460 977 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 RNF8O76064 485 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ZFPL1O95159 310 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SERPINF2P08697 491 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ATXN1LP0C7T5 689 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 CCDC172P0C7W6 258 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 GIMD1P0DJR0 217 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 KITP10721 976 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PTMSP20962 102 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 OXTRP30559 389 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CA5AP35218 305 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PCK1P35558 622 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SOX8P57073 446 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 TPM4P67936 248 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CXADRP78310 365 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 KRT83P78385 493 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SULT2A1Q06520 285 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 BYSLQ13895 437 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 HABP2Q14520 560 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 DPYSL2Q16555 572 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ZNF284Q2VY69 593 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 TIGD2Q4W5G0 525 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 BOLA3Q53S33 107 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ANKRD20A8PQ5CZ79 823 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 NCBP2-AS2Q69YL0 99 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CRIP3Q6Q6R5 217 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 MFSD7Q6UXD7 560 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SLC36A4Q6YBV0 504 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 DBX2Q6ZNG2 339 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ERN2Q76MJ5 926 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 RHOUQ7L0Q8 258 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CHST15Q7LFX5 561 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 DGLUCYQ7Z3D6 616 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 MRGPREQ86SM8 312 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PIP4P1Q86T03 277 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SRLQ86TD4 932 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 SLC25A45Q8N413 288 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 DCAF4L2Q8NA75 395 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 Q8NA96 180 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 KDM1BQ8NB78 822 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 FAM156AQ8NDB6 213 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CADM4Q8NFZ8 388 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 OR2T34Q8NGX1 318 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 BRIX1Q8TDN6 353 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 OR8D1Q8WZ84 308 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 RNF31Q96EP0 1072 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 CCDC42Q96M95 316 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ZNF830Q96NB3 372 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 LGMNQ99538 433 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 FAM118BQ9BPY3 351 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 DESI2Q9BSY9 194 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 WRAP53Q9BUR4 548 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 MLST8Q9BVC4 326 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ALOXE3Q9BYJ1 711 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 BRD8Q9H0E9 1235 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 GPR35Q9HC97 309 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 TMEM9BQ9NQ34 198 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.25□□□□□ -1.73
SPG11-211ENST00000558561 RLIMQ9NVW2 624 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 DKK2Q9UBU2 259 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 IPO11Q9UI26 975 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 PACSIN2Q9UNF0 486 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 NCKAP1Q9Y2A7 1128 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 PCDHGA5Q9Y5G8 931 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 ALG6Q9Y672 507 aa4.25□□□□□ -1.73
SPG11-211ENST00000558561 BZW2Q9Y6E2 419 aaKnown RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 EPN1Q9Y6I3 576 aaPredicted RBP4.25□□□□□ -1.73
SPG11-211ENST00000558561 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.25□□□□□ -1.73
SPG11-211ENST00000558561 CFAP69A5D8W1 941 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 FAM227AF5H4B4 570 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TLR4O00206 839 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TRAFD1O14545 582 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 TPP1O14773 563 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 AREL1O15033 823 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 LATO43561 262 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 MFSD11O43934 449 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 RNASEH1O60930 286 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms