RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 LSM14AQ8ND56 463 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 SEC14L1Q92503 715 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 TFGQ92734 400 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 SLC22A18Q96BI1 424 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 PRR11Q96HE9 360 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 C9orf72Q96LT7 481 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 TGM7Q96PF1 710 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 UBL7Q96S82 380 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 KIFC1Q9BW19 673 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 HRASLS2Q9NWW9 162 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 KLHL3Q9UH77 587 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 TMPRSS11EQ9UL52 423 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 ST14Q9Y5Y6 855 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 COMMD10Q9Y6G5 202 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 FAM237BA0A1B0GVD1 139 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 OR5K3A6NET4 321 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 PRR19A6NJB7 356 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 A8MU76 341 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 C2orf74A8MZ97 194 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 E5RI56 91 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 C9P02748 559 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ESR1P03372 595 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 CCNYL3P0C7X3 344 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 SFTPCP11686 197 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ETS1P14921 441 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 TYRP1P17643 537 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 PAX7P23759 505 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 FOXN2P32314 431 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 CCNFP41002 786 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 KCNJ1P48048 391 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 MC2RQ01718 297 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 TLE3Q04726 772 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 CKAP4Q07065 602 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 FOXM1Q08050 763 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 PTK6Q13882 451 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 BOP1Q14137 746 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 CLCA4Q14CN2 919 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 C16orf72Q14CZ0 275 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 KIAA0930Q6ICG6 404 aaPredicted RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 OTOAQ7RTW8 1153 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ARHGAP22Q7Z5H3 698 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ZNF761Q86XN6 746 aaPredicted RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 TBC1D21Q8IYX1 336 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 PDIK1LQ8N165 341 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ESX1Q8N693 406 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 SIDT2Q8NBJ9 832 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 DENND1AQ8TEH3 1009 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ART4Q93070 314 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 NAF1Q96HR8 494 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 ANKRD27Q96NW4 1050 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 FCRL3Q96P31 734 aaPredicted RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 FAM167BQ9BTA0 163 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 TBC1D10AQ9BXI6 508 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ZNF768Q9H5H4 540 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 CAAP1Q9H8G2 361 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 INTS7Q9NVH2 962 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 INTS10Q9NVR2 710 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 PIH1D1Q9NWS0 290 aaKnown RBP8.45□□□□□ -1.06
USP3-208ENST00000558285 SLC24A2Q9UI40 661 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 RARRES3Q9UL19 164 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 SOX13Q9UN79 622 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ASF1AQ9Y294 204 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 ACACAQ13085 2346 aa8.45□□□□□ -1.06
USP3-208ENST00000558285 EPG5Q9HCE0 2579 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 CACNA1BQ00975 2339 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 MAP1BP46821 2468 aaKnown RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 PRAMEF33A0A0G2JMD5 474 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 ZNF839A8K0R7 811 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 TAF4O00268 1085 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 TLX3O43711 291 aaPredicted RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 PRAMEF10O60809 474 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 FKBP9O95302 570 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 ZBTB11O95625 1053 aaPredicted RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 EML2O95834 649 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 ZSCAN5DPP0CG00 497 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 MYBL2P10244 700 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 RPS3P23396 243 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP3-208ENST00000558285 MGAT1P26572 445 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 CSF2RBP32927 897 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 CXADRP78310 365 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 HSD11B2P80365 405 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 DR1Q01658 176 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 DHX34Q14147 1143 aaKnown RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 MAP7Q14244 749 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 TRIP13Q15645 432 aaPredicted RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 COL28A1Q2UY09 1125 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 CAPRIN2Q6IMN6 1127 aaKnown RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 LRRC8EQ6NSJ5 796 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 UGT3A1Q6NUS8 523 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 C19orf48Q6RUI8 117 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 UNC5DQ6UXZ4 953 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 MAATS1Q7Z4T9 603 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 PPP1R3BQ86XI6 285 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 RASGRP3Q8IV61 690 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 DRAXINQ8NBI3 349 aaPredicted RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 RCBTB1Q8NDN9 531 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 OR13J1Q8NGT2 312 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 SKA2Q8WVK7 121 aaPredicted RBP8.44□□□□□ -1.06
USP3-208ENST00000558285 SLCO2A1Q92959 643 aa8.44□□□□□ -1.06
USP3-208ENST00000558285 INSM2Q96T92 566 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms