RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ETV3P41162 512 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 SLC6A11P48066 632 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 HK3P52790 923 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 AQP4P55087 323 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 DPTQ07507 201 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 ADAM15Q13444 863 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 GTF2H2Q13888 395 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 SMU1Q2TAY7 513 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 GTF2H2CQ6P1K8 395 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 CYHR1Q6ZMK1 362 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 TICAM1Q8IUC6 712 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 POU5F2Q8N7G0 328 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 HM13Q8TCT9 377 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 LKAAEAR1Q8TD35 194 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 AP2M1Q96CW1 435 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 NECTIN4Q96NY8 510 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 TRMT61BQ9BVS5 477 aaKnown RBP12.39□□□□□ -0.43
SHMT2-229ENST00000557348 SLC12A9Q9BXP2 914 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 CD244Q9BZW8 370 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 ABCG8Q9H221 673 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 FBRSQ9HAH7 460 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 PARVBQ9HBI1 364 aa12.39□□□□□ -0.43
SHMT2-229ENST00000557348 EIF2B4Q9UI10 523 aaKnown RBP12.39□□□□□ -0.43
SHMT2-229ENST00000557348 LOC100653049A0A140TA62 436 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TMEM221A6NGB7 291 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 EPOPA6NHQ4 379 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 K7EPI3 171 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PIP5K1BO14986 540 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 HNRNPRO43390 633 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 DNAJA2O60884 412 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 KRT34O76011 436 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 WDR47O94967 919 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 KAT7O95251 611 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 MATN4O95460 622 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 LAMP2P13473 410 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ZNF12P17014 697 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ITGB6P18564 788 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 CCR7P32248 378 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 BMP8BP34820 402 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 GGT5P36269 586 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PRLHRP49683 370 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ART3Q13508 389 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 FASTKQ14296 549 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PDCD4Q53EL6 469 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 RPS27LQ71UM5 84 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ERN2Q76MJ5 926 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 LRRC70Q7Z2Q7 622 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PGAM4Q8N0Y7 254 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 MCOLN3Q8TDD5 553 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 GLMNQ92990 594 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ATP6V1E2Q96A05 226 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 RHBDF1Q96CC6 855 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NMD3Q96D46 503 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NUS1Q96E22 293 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NSUN5Q96P11 429 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 APOL5Q9BWW9 433 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 C8orf4Q9NR00 106 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 CD84Q9UIB8 345 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ADAMTS6Q9UKP5 1117 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 MUC22E2RYF6 1773 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 OTOL1A6NHN0 477 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 STK16O75716 305 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ADH1BP00325 375 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PORP16435 677 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 EPB42P16452 691 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TSPAN8P19075 237 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ITGAXP20702 1163 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TNFRSF4P43489 277 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 AGTR2P50052 363 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NUDT2P50583 147 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 EMP3P54852 163 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ADGRE1Q14246 886 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 PTK2BQ14289 1009 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NADK2Q4G0N4 442 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 SYTL3Q4VX76 610 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 XKR7Q5GH72 579 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 COQ5Q5HYK3 327 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 LRRC73Q5JTD7 316 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 HACD2Q6Y1H2 254 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 Q6ZNX1 250 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 UBE2R2Q712K3 238 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 GOLGA7Q7Z5G4 137 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 SYVN1Q86TM6 617 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 MIER2Q8N344 545 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 CXorf40AQ8TE69 158 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ATL1Q8WXF7 558 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 ASB11Q8WXH4 323 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 SCAMP4Q969E2 229 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TMEM159Q96B96 161 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TUBGCP3Q96CW5 907 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 FOPNLQ96NB1 174 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 FAM129BQ96TA1 746 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 NTMT1Q9BV86 223 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 SLC29A3Q9BZD2 475 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 OCEL1Q9H607 264 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 AKTIPQ9H8T0 292 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TNFRSF12AQ9NP84 129 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 UBAP1Q9NZ09 502 aa12.38□□□□□ -0.43
SHMT2-229ENST00000557348 RSL24D1Q9UHA3 163 aaKnown RBP12.38□□□□□ -0.43
SHMT2-229ENST00000557348 TRPS1Q9UHF7 1281 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms