RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	HIST1H2AJ	Q99878	128 aa		12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	H2AFJ	Q9BTM1	129 aa		12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	CPNE7	Q9UBL6	633 aa		12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	DCDC2	Q9UHG0	476 aa		12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	RNF112	Q9ULX5	631 aa		12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	RUVBL2	Q9Y230	463 aa	Known RBP	12.21	□□□□□ -0.45
ABCD4-223	ENST00000555904	TRBV23OR9-2	A0A075B6M9	112 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904		A0A1W2PPM1	405 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	NPEPPSL1	A6NEC2	478 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	C4orf47	A7E2U8	309 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RHPN2P1	A8MT19	583 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	SYCE1L	A8MT33	242 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	CDX4	O14627	284 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	MAP2K7	O14733	419 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	ATP8B1	O43520	1251 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	SIGLEC6	O43699	453 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	PSIP1	O75475	530 aa	Known RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	WISP3	O95389	354 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	SYF2	O95926	243 aa	Known RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	S100B	P04271	92 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RBP1	P09455	135 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	CD1D	P15813	335 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	TFEB	P19484	476 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	GLRB	P48167	497 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	PPM1F	P49593	454 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	CSRP3	P50461	194 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	DUSP3	P51452	185 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	DAB2	P98082	770 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	ACAP2	Q15057	778 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	OGFOD3	Q6PK18	319 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	XKR5	Q6UX68	686 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	NAXD	Q8IW45	347 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	CENPL	Q8N0S6	344 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	C4orf33	Q8N1A6	199 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	OR5AR1	Q8NGP9	310 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	STAG3L4	Q8TBR4	150 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RHBDD1	Q8TEB9	315 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	ZFPM2	Q8WW38	1151 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	PATE1	Q8WXA2	126 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	ASB11	Q8WXH4	323 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	NAT6	Q93015	286 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RAD51AP1	Q96B01	352 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	APOPT1	Q96IL0	206 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	APOLD1	Q96LR9	279 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	HGH1	Q9BTY7	390 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RAB11FIP5	Q9BXF6	653 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	PARVB	Q9HBI1	364 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	TMBIM4	Q9HC24	238 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RXFP3	Q9NSD7	469 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	ZNF446	Q9NWS9	450 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	SCHIP1	Q9P0W5	487 aa	Predicted RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	FTSJ1	Q9UET6	329 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	RAPGEFL1	Q9UHV5	662 aa		12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	TDRKH	Q9Y2W6	561 aa	Known RBP	12.2	□□□□□ -0.46
ABCD4-223	ENST00000555904	MUC6	Q6W4X9	2439 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	CACNA1H	O95180	2353 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ZNF839	A8K0R7	811 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	TRIM38	O00635	465 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	NUDT21	O43809	227 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	NOBOX	O60393	691 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SASH3	O75995	380 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	C1orf105	O95561	183 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	GLB1	P16278	677 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	TGM1	P22735	817 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SLC19A1	P41440	591 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	FASLG	P48023	281 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	MAZ	P56270	477 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	AP1S2	P56377	157 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	PRKG2	Q13237	762 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	TSN	Q15631	228 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	STPG1	Q5TH74	334 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	DUS1L	Q6P1R4	473 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	GPSM1	Q86YR5	675 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SLC35F3	Q8IY50	421 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ARL14	Q8N4G2	192 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	FAM181A	Q8N9Y4	354 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	PHC3	Q8NDX5	983 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	GPR156	Q8NFN8	814 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	KIAA1191	Q96A73	305 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	NXNL1	Q96CM4	212 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SLC38A3	Q99624	504 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	EGFL8	Q99944	293 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SLC12A9	Q9BXP2	914 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	UNK	Q9C0B0	810 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ZMYND15	Q9H091	742 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	TFB2M	Q9H5Q4	396 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ALG9	Q9H6U8	611 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	KIR3DX1	Q9H7L2	352 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	SLC40A1	Q9NP59	571 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	IGSF5	Q9NSI5	407 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ARL15	Q9NXU5	204 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ZNF624	Q9P2J8	865 aa	Predicted RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	LNPEP	Q9UIQ6	1025 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	GRID1	Q9ULK0	1009 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	PADI4	Q9UM07	663 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	NOVA2	Q9UNW9	492 aa	Known RBP	12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	ACTL7B	Q9Y614	415 aa		12.19	□□□□□ -0.46
ABCD4-223	ENST00000555904	TP53BP1	Q12888	1972 aa	Predicted RBP	12.19	□□□□□ -0.46

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