RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	GUSBP11	Q6P575	273 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TMEM207	Q6UWW9	146 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TIFAB	Q6ZNK6	161 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TMEM26	Q6ZUK4	368 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	EFL1	Q7Z2Z2	1120 aa	Known RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	CROCCP2	Q86T23	111 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	DCUN1D3	Q8IWE4	304 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	PHC3	Q8NDX5	983 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	OR2W6P	Q8NHA6	318 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	IFI44	Q8TCB0	444 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	EPS8L3	Q8TE67	593 aa	Known RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	ASB11	Q8WXH4	323 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	CCDC74A	Q96AQ1	378 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TMEM109	Q9BVC6	243 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	KIR3DX1	Q9H7L2	352 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	TSR3	Q9UJK0	312 aa	Known RBP	13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	ACOT9	Q9Y305	439 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	PCDHGA1	Q9Y5H4	931 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	NFS1	Q9Y697	457 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	KNL1	Q8NG31	2342 aa		13.92	□□□□□ -0.18
CHD8-208	ENST00000555301	RALGAPA1	Q6GYQ0	2036 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301		A0A096LPK6	155 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	TLDC2	A0PJX2	215 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	LILRA5	A6NI73	299 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	SMIM23	A6NLE4	172 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	SLC16A5	O15375	505 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	ZBTB14	O43829	449 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	PSIP1	O75475	530 aa	Known RBP	13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	C1orf105	O95561	183 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	MPO	P05164	745 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	C2	P06681	752 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	C8G	P07360	202 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	SLC35E2B	P0CK96	405 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	CCDC166	P0CW27	439 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	H2AFX	P16104	143 aa	Predicted RBP	13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	MAP4	P27816	1152 aa	Known RBP	13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	MAGEA12	P43365	314 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	ACADVL	P49748	655 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	CSRP3	P50461	194 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	EPHA4	P54764	986 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	ATP6V0D1	P61421	351 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	SP140	Q13342	867 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	GPR18	Q14330	331 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	IQCK	Q8N0W5	287 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	OR5AR1	Q8NGP9	310 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	RAD51AP1	Q96B01	352 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	CABS1	Q96KC9	395 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	UBXN10	Q96LJ8	280 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	DERL2	Q9GZP9	239 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	EPB41L1	Q9H4G0	881 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	TBK1	Q9UHD2	729 aa		13.91	□□□□□ -0.18
CHD8-208	ENST00000555301	PRAMEF33	A0A0G2JMD5	474 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	GFY	I3L273	518 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	CDK4	P11802	303 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	KRT15	P19012	456 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	CYP2A7	P20853	494 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	NOVA1	P51513	510 aa	Known RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	GPLD1	P80108	840 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	PRKG2	Q13237	762 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	PLCL1	Q15111	1095 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	LRIG3	Q6UXM1	1119 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	UBE2R2	Q712K3	238 aa	Predicted RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	RAB42	Q8N4Z0	105 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	FBXO15	Q8NCQ5	510 aa	Predicted RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	WDR48	Q8TAF3	677 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	ANKRD49	Q8WVL7	239 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	CCDC3	Q9BQI4	270 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	HGH1	Q9BTY7	390 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	SLC12A9	Q9BXP2	914 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	VPS11	Q9H270	941 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	TFB2M	Q9H5Q4	396 aa	Known RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	KCNK4	Q9NYG8	393 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	EURL	Q9NYK6	297 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	CTNNAL1	Q9UBT7	734 aa		13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	RUVBL2	Q9Y230	463 aa	Known RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	TDRKH	Q9Y2W6	561 aa	Known RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	COL5A1	P20908	1838 aa	Predicted RBP	13.9	□□□□□ -0.18
CHD8-208	ENST00000555301	RIF1	Q5UIP0	2472 aa	Known RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	TP53BP1	Q12888	1972 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	GVINP1	Q7Z2Y8	2422 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	UQCRHL	A0A096LP55	91 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	FAM221B	A6H8Z2	402 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	PABPN1L	A6NDY0	278 aa	Known RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	RFPL1	O75677	317 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	RFPL3	O75679	317 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	MT-ND3	P03897	115 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	UQCRH	P07919	91 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	ENO2	P09104	434 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	LTA4H	P09960	611 aa	Known RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	COL6A2	P12110	1019 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	HIST1H2AD	P20671	130 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	ALDH4A1	P30038	563 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	BDKRB1	P46663	353 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	E2F1	Q01094	437 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	ZNF844	Q08AG5	666 aa		13.89	□□□□□ -0.19
CHD8-208	ENST00000555301	CSHL1	Q14406	222 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms