RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GATAD2AQ86YP4 633 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 ARHGAP12Q8IWW6 846 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 PGAP3Q96FM1 320 aaPredicted RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 TDP1Q9NUW8 608 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 PSME2Q9UL46 239 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 LYVE1Q9Y5Y7 322 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 CFAP20Q9Y6A4 193 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 SERPINA1P01009 418 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 KRT8P05787 483 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 DBTP11182 482 aaKnown RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 TYRP14679 529 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 GNAZP19086 355 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 CDKN1CP49918 316 aaPredicted RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 MTTPP55157 894 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 ELP6Q0PNE2 266 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 TAZQ16635 292 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 UNC50Q53HI1 259 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 PERM1Q5SV97 790 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 GRASPQ7Z6J2 395 aaPredicted RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 TRIM74Q86UV6 250 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 USP7Q93009 1102 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 SLCO3A1Q9UIG8 710 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 SLC28A2O43868 658 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 KRT75O95678 551 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 GNRH1P01148 92 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 IL6P05231 212 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 IGFBP5P24593 272 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 TMED10P49755 219 aaKnown RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 SPANXN4Q5MJ08 99 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 MED27Q6P2C8 311 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 ARL10Q8N8L6 244 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 CGREF1Q99674 301 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 C8GP07360 202 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 HTR1BP28222 390 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 CEACAM7Q14002 265 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 ALKAL1Q6UXT8 129 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 TPRG1Q6ZUI0 275 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 ZNF534Q76KX8 674 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 MMAAQ8IVH4 418 aaKnown RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 EPB41L1Q9H4G0 881 aa15.97■□□□□ 0.15
CUX1-213ENST00000549414 CCDC177Q9NQR7 707 aaPredicted RBP15.97■□□□□ 0.15
CUX1-213ENST00000549414 FYNP06241 537 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 HLA-EP13747 358 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 POU2F1P14859 743 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 C22orf39Q6P5X5 142 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 MBOAT1Q6ZNC8 495 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 BTN2A2Q8WVV5 523 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 C20orf27Q9GZN8 174 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 SPO11Q9Y5K1 396 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 LEFTY2O00292 366 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 GJB3O75712 270 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 CLIC3O95833 236 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 TTKP33981 857 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 DGKKQ5KSL6 1271 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 HID1Q8IV36 788 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 KCNJ9Q92806 393 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 FAIM2Q9BWQ8 316 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 SOHLH2Q9NX45 425 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 TESMINQ9Y4I5 508 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 MYOCOSA0A1B0GUC4 107 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 TGFB1P01137 390 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 PREPP48147 710 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 PTGR1Q14914 329 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 OR4D1Q15615 310 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 SNAP47Q5SQN1 464 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 GPRC6AQ5T6X5 926 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 OR4F3Q6IEY1 312 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 PARGQ86W56 976 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 TRPV1Q8NER1 839 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 KLHL25Q9H0H3 589 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 TMEM245Q9H330 911 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 KCNK13Q9HB14 408 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 EMCNQ9ULC0 261 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 PRKAB1Q9Y478 270 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 LRRC42Q9Y546 428 aa15.96■□□□□ 0.15
CUX1-213ENST00000549414 GBAP04062 536 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 PRPS2P11908 318 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 PLA2G16P53816 162 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 CDC42P60953 191 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 LDLRAP1Q5SW96 308 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 CHSY3Q70JA7 882 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 C16orf62Q7Z3J2 963 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 VN1R5Q7Z5H4 357 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 THAP5Q7Z6K1 395 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.96■□□□□ 0.144e-11■■■■■ 28.6
CUX1-213ENST00000549414 MAPRE3Q9UPY8 281 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 DMTF1Q9Y222 760 aa15.96■□□□□ 0.14
CUX1-213ENST00000549414 ABHD14A-ACY1A0A1B0GW23 586 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 ALOX12P18054 663 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 VARSP26640 1264 aaKnown RBP15.95■□□□□ 0.14
CUX1-213ENST00000549414 MAGEA6P43360 314 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 DNAJB13P59910 316 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 HKDC1Q2TB90 917 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 ARHGAP22Q7Z5H3 698 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 ZDHHC21Q8IVQ6 265 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 SORCS1Q8WY21 1168 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 AIF1LQ9BQI0 150 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 CEP44Q9C0F1 390 aa15.95■□□□□ 0.14
CUX1-213ENST00000549414 PHPT1Q9NRX4 125 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms