RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZNF385CQ66K41 422 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-218ENST00000548945 SLC6A19Q695T7 634 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 AMIGO1Q86WK6 493 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 CDKL3Q8IVW4 592 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-218ENST00000548945 KLHDC8BQ8IXV7 354 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 ZBTB2Q8N680 514 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 Q8NA96 180 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 OR13C4Q8NGS5 318 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 NAT14Q8WUY8 206 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.46□□□□□ -0.41
PTCH1-218ENST00000548945 LRRC45Q96CN5 670 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 TRAPPC9Q96Q05 1148 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 FERD3LQ96RJ6 166 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 NUDT9Q9BW91 350 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 GOLPH3Q9H4A6 298 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 ZDHHC3Q9NYG2 299 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 AP1M2Q9Y6Q5 423 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 AKR1B15C9JRZ8 316 aaPredicted RBP12.45□□□□□ -0.42
PTCH1-218ENST00000548945 H7C0S8 307 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 ZNF185O15231 689 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 KLHL41O60662 606 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 AGXTP21549 392 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 ACRV1P26436 265 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 PSMB4P28070 264 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 DEKP35659 375 aaKnown RBP12.45□□□□□ -0.42
PTCH1-218ENST00000548945 MAGEA1P43355 309 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 LMAN1P49257 510 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 ATP1A4Q13733 1029 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 BOP1Q14137 746 aaKnown RBP12.45□□□□□ -0.42
PTCH1-218ENST00000548945 CCDC181Q5TID7 509 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 VWA5B1Q5TIE3 1220 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 DENND5AQ6IQ26 1287 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 SPESP1Q6UW49 350 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 GPR135Q8IZ08 494 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 ADGRF3Q8IZF5 1079 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 RBMXL3Q8N7X1 1067 aaKnown RBP12.45□□□□□ -0.42
PTCH1-218ENST00000548945 OR52E1Q8NGJ3 308 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 ACTL9Q8TC94 416 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 KRT35Q92764 455 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 SGSM3Q96HU1 749 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 CALR3Q96L12 384 aaKnown RBP12.45□□□□□ -0.42
PTCH1-218ENST00000548945 SPATA13Q96N96 652 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 TBL1YQ9BQ87 522 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 APOL2Q9BQE5 337 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 HEMGNQ9BXL5 484 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 SLC7A5P2Q9GIP4 190 aa12.45□□□□□ -0.42
PTCH1-218ENST00000548945 PCSK5Q92824 1860 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 SVILO95425 2214 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 TCP11X1B4DZS4 312 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 PJA2O43164 708 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 ZNF749O43361 778 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 LDB2O43679 373 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 SEMA7AO75326 666 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 KLF7O75840 302 aaPredicted RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 AP2A2O94973 939 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 RBP3P10745 1247 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 MC4RP32245 332 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 CTNNA1P35221 906 aaKnown RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 OTUD4Q01804 1114 aaKnown RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 TBX2Q13207 712 aaPredicted RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 OLIG2Q13516 323 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 SSPNQ14714 243 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 PTCHD3Q3KNS1 767 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 RHBDD2Q6NTF9 364 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 CDHR3Q6ZTQ4 885 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 MRGPREQ86SM8 312 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 CCDC170Q8IYT3 715 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 PROKR1Q8TCW9 393 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 TFGQ92734 400 aaPredicted RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 TCTN2Q96GX1 697 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 C10orf88Q9H8K7 445 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 LUC7LQ9NQ29 371 aaKnown RBP12.44□□□□□ -0.42
PTCH1-218ENST00000548945 ACTR10Q9NZ32 417 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 PCDHA3Q9Y5H8 950 aa12.44□□□□□ -0.42
PTCH1-218ENST00000548945 A6NL46 340 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 H3BMH7 237 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 QSOX1O00391 747 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 LIN7AO14910 233 aaPredicted RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 DDX3YO15523 660 aaKnown RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 KCNN4O15554 427 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 ALPPP05187 535 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 CTNNA2P26232 953 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 PDHA2P29803 388 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 SHMT2P34897 504 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 EIF3EP60228 445 aaKnown RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 TMPRSS15P98073 1019 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 PRR30Q53SZ7 412 aaPredicted RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 FAM69BQ5VUD6 431 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 DARS2Q6PI48 645 aaKnown RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 IGFL3Q6UXB1 125 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 HOOK3Q86VS8 718 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 SERPINA9Q86WD7 417 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 IQCKQ8N0W5 287 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 C19orf47Q8N9M1 422 aaKnown RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 CLEC1AQ8NC01 280 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 PHC3Q8NDX5 983 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 N4BP2L2Q92802 583 aaPredicted RBP12.43□□□□□ -0.42
PTCH1-218ENST00000548945 FER1L6-AS2Q96M78 137 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 HGH1Q9BTY7 390 aa12.43□□□□□ -0.42
PTCH1-218ENST00000548945 MFRPQ9BY79 579 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms