RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KIF5AQ12840 1032 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 BFSP1Q12934 665 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 MPP7Q5T2T1 576 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 GRTP1Q5TC63 336 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 FAM109BQ6ICB4 259 aaPredicted RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 FAM198BQ6UWH4 519 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 ARMC9Q7Z3E5 817 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 GLRX5Q86SX6 157 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 TMPRSS11BQ86T26 416 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 LONP2Q86WA8 852 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 CFAP206Q8IYR0 622 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 ARHGAP24Q8N264 748 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 KCNH5Q8NCM2 988 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 MOSPD2Q8NHP6 518 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 DEPDC1BQ8WUY9 529 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 ROBO4Q8WZ75 1007 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 SYN2Q92777 582 aaPredicted RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 CITED2Q99967 270 aaPredicted RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 DESI2Q9BSY9 194 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 POLR3CQ9BUI4 534 aaPredicted RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 KATNB1Q9BVA0 655 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 FZD8Q9H461 694 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 Q9N2K0 584 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 STK26Q9P289 416 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 CPSF3Q9UKF6 684 aaKnown RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 CGNL1Q0VF96 1302 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 IGHV4OR15-8A0A075B7B6 117 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 A0A0G2JNG1 304 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 PLSCR5A0PG75 271 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 MAGEA13PA6NCF6 341 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 SLU7O95391 586 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 IGKV3-20P01619 116 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 H1F0P07305 194 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 SMIM18P0DKX4 95 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 DAOP14920 347 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 CSF2RAP15509 400 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 CD22P20273 847 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 CTNNA1P35221 906 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 AHRP35869 848 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 IL15P40933 162 aaPredicted RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 CRKLP46109 303 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 EEF1A1P68104 462 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 MBTD1Q05BQ5 628 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 DMPKQ09013 629 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 KIR2DS5Q14953 304 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 EEF1A1P5Q5VTE0 462 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 UNQ6126/PRO20091Q6UXV3 157 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 PACS1Q6VY07 963 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.9□□□□□ -1.794e-10■■■■□ 25.2
VPS29-205ENST00000548539 MFSD6Q6ZSS7 791 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 PIWIL4Q7Z3Z4 852 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 ARHGAP22Q7Z5H3 698 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 TLK2Q86UE8 772 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 COMMD2Q86X83 199 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 FAM219AQ8IW50 185 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 ANKRD13CQ8N6S4 541 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 L3MBTL4Q8NA19 623 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 SPATA20Q8TB22 786 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 NUDCD2Q8WVJ2 157 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 SECTM1Q8WVN6 248 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 KCNE4Q8WWG9 221 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 EXT2Q93063 718 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 LMLNQ96KR4 655 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 MUS81Q96NY9 551 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 FNBP1Q96RU3 617 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 MEIS3Q99687 375 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 CPNE1Q99829 537 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 FERMT1Q9BQL6 677 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 TRAF4Q9BUZ4 470 aaPredicted RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 ACKR4Q9NPB9 350 aa3.9□□□□□ -1.79
VPS29-205ENST00000548539 ABT1Q9ULW3 272 aaKnown RBP3.9□□□□□ -1.79
VPS29-205ENST00000548539 A0A1W2PPQ1 181 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 MED19A0JLT2 244 aaPredicted RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 FAM170AA1A519 330 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 OR6C76A6NM76 312 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 ANXA2P2A6NMY6 339 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 H0Y626 953 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 DVL1O14640 695 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 PTGESO14684 152 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 CLIC2O15247 247 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 PPP1R3DO95685 299 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 HSP90AB1P08238 724 aaKnown RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 HOXC8P31273 242 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 BMXP51813 675 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 ART1P52961 327 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 MLLT10P55197 1068 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 POLR2LP62875 67 aaKnown RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 DUOXA1Q1HG43 343 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 IZUMO4Q1ZYL8 232 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 KIF19Q2TAC6 998 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 MDH1BQ5I0G3 518 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 TCTE1Q5JU00 501 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 SIRPB2Q5JXA9 342 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 C9orf57Q5W0N0 161 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 NADSYN1Q6IA69 706 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 MFSD12Q6NUT3 480 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 PRSS57Q6UWY2 283 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 KCTD8Q6ZWB6 473 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 C16orf82Q7Z2V1 217 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 MUC20Q8N307 709 aaPredicted RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms