RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NANOGQ9H9S0 305 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 PNPLA3Q9NST1 481 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ELOVL2Q9NXB9 296 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 THEGQ9P2T0 379 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 DPP7Q9UHL4 492 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ZNF639Q9UID6 485 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 ANAPC2Q9UJX6 822 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 SLC8A2Q9UPR5 921 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 COMMD3-BMI1R4GMX3 469 aa9.67□□□□□ -0.86
SS18-205ENST00000542420 A0A1W2PRU2 124 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PABPN1LA6NDY0 278 aaKnown RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 IQCF5A8MTL0 148 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 MANBAO00462 879 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PRMT3O60678 531 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ULK1O75385 1050 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 KCNH1O95259 989 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 TRIM16O95361 564 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PAPLNO95428 1278 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 FTH1P02794 183 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CYP2A7P20853 494 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 MSX2P35548 267 aaPredicted RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 RECQLP46063 649 aaPredicted RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 SLC6A12P48065 614 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HSPA7P48741 367 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PHEXP78562 749 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ZNF77Q15935 545 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PAGE3Q5JUK9 113 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 DLEU7Q6UYE1 221 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 NRSN1Q8IZ57 195 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 DDHD1Q8NEL9 900 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ARMC5Q96C12 935 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 FCRL1Q96LA6 429 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CGREF1Q99674 301 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HEPHQ9BQS7 1158 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 NSUN3Q9H649 340 aaKnown RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 BRD9Q9H8M2 597 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 GORASP2Q9H8Y8 452 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 SPHK2Q9NRA0 654 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CIDEBQ9UHD4 219 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 FBXO10Q9UK96 956 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 SNX6Q9UNH7 406 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 MAN2B2Q9Y2E5 1009 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ASB1Q9Y576 335 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ZNF839A8K0R7 811 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 GFYI3L273 518 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HIST1H2AGP0C0S8 130 aaPredicted RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 ZCCHC18P0CG32 403 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CDH1P12830 882 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CSF2RAP15509 400 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HIST1H2ADP20671 130 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 IL12AP29459 219 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CCT8P50990 548 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PNLIPRP1P54315 467 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 NR1H2P55055 460 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 NME5P56597 212 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 C21orf58P58505 322 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 PPIGQ13427 754 aaKnown RBP eCLIP9.66□□□□□ -0.862e-6■■■■□ 23.1
SS18-205ENST00000542420 ARHGEF7Q14155 803 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 DPY19L1Q2PZI1 675 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 C10orf62Q5T681 223 aaPredicted RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 DUS1LQ6P1R4 473 aaKnown RBP9.66□□□□□ -0.86
SS18-205ENST00000542420 ZBTB49Q6ZSB9 765 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 KIAA2013Q8IYS2 634 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ASB11Q8WXH4 323 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 LZICQ8WZA0 190 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 STARD8Q92502 1023 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HIST1H2AHQ96KK5 128 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 RDH12Q96NR8 316 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ACOX2Q99424 681 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 HIST1H2AJQ99878 128 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 H2AFJQ9BTM1 129 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ZSCAN5AQ9BUG6 496 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 TNKS2Q9H2K2 1166 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ACTL8Q9H568 366 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CLMPQ9H6B4 373 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 EPHX3Q9H6B9 360 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 LRTM1Q9HBL6 345 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 VCX3AQ9NNX9 186 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 TDP1Q9NUW8 608 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 C1orf109Q9NX04 203 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 GIMAP2Q9UG22 337 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 CLEC4EQ9ULY5 219 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 AP1M2Q9Y6Q5 423 aa9.66□□□□□ -0.86
SS18-205ENST00000542420 ZNF197O14709 1029 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 AKAP10O43572 662 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 XYLBO75191 536 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 ERN1O75460 977 aaKnown RBP9.65□□□□□ -0.86
SS18-205ENST00000542420 RASAL1O95294 804 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 HSD3B1P14060 373 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 ATP1B2P14415 290 aaPredicted RBP9.65□□□□□ -0.86
SS18-205ENST00000542420 UGT1A6P19224 532 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 UGT1A1P22309 533 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 UGT1A4P22310 534 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 LHCGRP22888 699 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 HSD3B2P26439 372 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 UGT1A3P35503 534 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 UGT1A5P35504 534 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 NNMTP40261 264 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 RPIAP49247 311 aa9.65□□□□□ -0.86
SS18-205ENST00000542420 HTR6P50406 440 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms