RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 STK19P49842 368 aaPredicted RBP12.28□□□□□ -0.44
RNF4-222ENST00000541204 IL2P60568 153 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 LRRC73Q5JTD7 316 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 BROXQ5VW32 411 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 R3HCC1LQ7Z5L2 792 aaKnown RBP12.28□□□□□ -0.44
RNF4-222ENST00000541204 TCEAL8Q8IYN2 117 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 METTL6Q8TCB7 284 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CD200R1Q8TD46 325 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 ZNF689Q96CS4 500 aaPredicted RBP12.28□□□□□ -0.44
RNF4-222ENST00000541204 COX4I2Q96KJ9 171 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 SMURF2Q9HAU4 748 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 TMEM9Q9P0T7 183 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 RIMKLBQ9ULI2 386 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 DOLKQ9UPQ8 538 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 SH3BP1Q9Y3L3 701 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CORINQ9Y5Q5 1042 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 MICAL3Q7RTP6 2002 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 DYTNA2CJ06 578 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 KATNA1O75449 491 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 SEC14L2O76054 403 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 KCNH1O95259 989 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CLDN7O95471 211 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 PRAMEF1O95521 474 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 NPPAP01160 153 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 ANXA6P08133 673 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CTSOP43234 321 aaPredicted RBP12.28□□□□□ -0.44
RNF4-222ENST00000541204 CCR3P51677 355 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 TMBIM6P55061 237 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 TGFBIQ15582 683 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 MOGQ16653 247 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 FAM98BQ52LJ0 330 aaKnown RBP12.28□□□□□ -0.44
RNF4-222ENST00000541204 DCDC5Q6ZRR9 648 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 HS3ST5Q8IZT8 346 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 DPP10Q8N608 796 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 SLC15A4Q8N697 577 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 MYLIPQ8WY64 445 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 FIG4Q92562 907 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 ALG14Q96F25 216 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CSF3RQ99062 836 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CGREF1Q99674 301 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 CORO1BQ9BR76 489 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 TOR3AQ9H497 397 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 PFDN4Q9NQP4 134 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 UTS2RQ9UKP6 389 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 SH3GLB1Q9Y371 365 aa12.28□□□□□ -0.44
RNF4-222ENST00000541204 ZBBXA8MT70 800 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 NOBOXO60393 691 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 CBFA2T3O75081 653 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 TULP3O75386 442 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 PRSS23O95084 383 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 GUCA1CO95843 209 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 CRHBPP24387 322 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 WDR5P61964 334 aaKnown RBP12.27□□□□□ -0.44
RNF4-222ENST00000541204 CHRNB3Q05901 458 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 ATP1A4Q13733 1029 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 NR6A1Q15406 480 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 IMPG1Q17R60 797 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 ANKRD34AQ69YU3 496 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 CYP20A1Q6UW02 462 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 ENPP6Q6UWR7 440 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 THAP5Q7Z6K1 395 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 DDX53Q86TM3 631 aaKnown RBP12.27□□□□□ -0.44
RNF4-222ENST00000541204 CMTM8Q8IZV2 173 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 NAT16Q8N8M0 369 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 FBXO30Q8TB52 745 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 SLC22A17Q8WUG5 538 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 MRPS31Q92665 395 aaKnown RBP12.27□□□□□ -0.44
RNF4-222ENST00000541204 CNDP2Q96KP4 475 aaKnown RBP12.27□□□□□ -0.44
RNF4-222ENST00000541204 C17orf80Q9BSJ5 609 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 HERC2P3Q9BVR0 1158 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 IL17CQ9P0M4 197 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 POLR3HQ9Y535 204 aaPredicted RBP12.27□□□□□ -0.44
RNF4-222ENST00000541204 MYO7AQ13402 2215 aa12.27□□□□□ -0.44
RNF4-222ENST00000541204 CHD5Q8TDI0 1954 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 G3V2T6 193 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 ABCB7O75027 752 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 ATP6V1G1O75348 118 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 PGLSO95336 258 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 TRIM16O95361 564 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 BCL10O95999 233 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 CLTBP09497 229 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 OCM2P0CE71 109 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 OCMP0CE72 109 aaPredicted RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 LAG3P18627 525 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 GGT1P19440 569 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 PIGFQ07326 219 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 BCL2L1Q07817 233 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 LMAN2Q12907 356 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 PPP1R8Q12972 351 aaKnown RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 LAPTM5Q13571 262 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 CBX2Q14781 532 aaPredicted RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 RFTN2Q52LD8 501 aaPredicted RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 INO80DQ53TQ3 878 aaPredicted RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 PTRHD1Q6GMV3 140 aaKnown RBP12.27□□□□□ -0.45
RNF4-222ENST00000541204 GALNT18Q6P9A2 607 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 ZDHHC13Q8IUH4 622 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 PIH1D2Q8WWB5 315 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 ZNF583Q96ND8 569 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 ZNF382Q96SR6 550 aa12.27□□□□□ -0.45
RNF4-222ENST00000541204 C2orf49Q9BVC5 232 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms