RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PNPLA1Q8N8W4 532 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 HJURPQ8NCD3 748 aaPredicted RBP9.81□□□□□ -0.84
TRAF1-202ENST00000540010 PIK3C3Q8NEB9 887 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 S100ZQ8WXG8 99 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ZNF599Q96NL3 588 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 KCTD3Q9Y597 815 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 LYVE1Q9Y5Y7 322 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 MYO16Q9Y6X6 1858 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ILVBLA1L0T0 632 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 KPNA5O15131 536 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 IDH3BO43837 385 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 KLKB1P03952 638 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ADH1AP07327 375 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 FBXW4P57775 412 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 SPIBQ01892 262 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 CREMQ03060 361 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.81□□□□□ -0.84
TRAF1-202ENST00000540010 PTPRCAPQ14761 206 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 SYT16Q17RD7 645 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 RFX4Q33E94 735 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ELMSAN1Q6PJG2 1045 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 DOK6Q6PKX4 331 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 EIF3MQ7L2H7 374 aaKnown RBP9.81□□□□□ -0.84
TRAF1-202ENST00000540010 SPATA19Q7Z5L4 167 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 TADA1Q96BN2 335 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ROPN1LQ96C74 230 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 FBXL20Q96IG2 436 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 CHCHD6Q9BRQ6 235 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 LRTM1Q9HBL6 345 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 GNPTGQ9UJJ9 305 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 ZNF638Q14966 1978 aaKnown RBP9.81□□□□□ -0.84
TRAF1-202ENST00000540010 BRCA2P51587 3418 aa9.81□□□□□ -0.84
TRAF1-202ENST00000540010 DYTNA2CJ06 578 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 SUV39H1O43463 412 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 FGBP02675 491 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PABPC1P11940 636 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 GJA1P17302 382 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CENPAP49450 140 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ACOX1Q15067 660 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 FBXO46Q6PJ61 603 aaPredicted RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ERI1Q8IV48 349 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PHACTR4Q8IZ21 702 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 UBE2J2Q8N2K1 259 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PGBD5Q8N414 524 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 KLHL23Q8NBE8 558 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ACVR1CQ8NER5 493 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 LRRC58Q96CX6 371 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 FEM1CQ96JP0 617 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 KCNA7Q96RP8 456 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 COPS8Q99627 209 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 YIPF2Q9BWQ6 316 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 SPRTNQ9H040 489 aaPredicted RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 DNAAF2Q9NVR5 837 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CFAP97Q9P2B7 532 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 IFT80Q9P2H3 777 aaPredicted RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 RAI2Q9Y5P3 530 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CCDC162PA2VCL2 907 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CENPXA8MT69 81 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 LOC110117498-PIK3R3F6TDL0 507 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 OR10H3O60404 316 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 RNASEH2AO75792 299 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PGLSO95336 258 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ASLP04424 464 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 C8AP07357 584 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PAICSP22234 425 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 KIR3DL1P43629 444 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CASP9P55211 416 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 TPTEP56180 551 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 HMGCS1Q01581 520 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CEACAM7Q14002 265 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ZSWIM7Q19AV6 140 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 KRT73Q86Y46 540 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 GATAD2AQ86YP4 633 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CRIPAKQ8N1N5 446 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 C10orf53Q8N6V4 93 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 SIDT2Q8NBJ9 832 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 LEMD2Q8NC56 503 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 MRM3Q9HC36 420 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 FKBPLQ9UIM3 349 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 EMCNQ9ULC0 261 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 GTF2A1LQ9UNN4 478 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ERGIC3Q9Y282 383 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 SLC28A1O00337 649 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 INSIG1O15503 277 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 TBX1O43435 398 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 RGS10O43665 173 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 KDELR3O43731 214 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 NOS3P29474 1203 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 CCNIQ14094 377 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 PLPP4Q5VZY2 271 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 P2RY8Q86VZ1 359 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 SLC34A3Q8N130 599 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 NRG4Q8WWG1 115 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 MYDGFQ969H8 173 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 C12orf43Q96C57 262 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 ITCHQ96J02 903 aa9.8□□□□□ -0.84
TRAF1-202ENST00000540010 RBM4BQ9BQ04 359 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 RBM4Q9BWF3 364 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 TDRD1Q9BXT4 1180 aaKnown RBP9.8□□□□□ -0.84
TRAF1-202ENST00000540010 WDR12Q9GZL7 423 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms