RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SECISBP2L	Q93073	1101 aa	Known RBP	2.58	□□□□□ -2
CD44-238	ENST00000534296	ZNF622	Q969S3	477 aa	Known RBP eCLIP	2.58	□□□□□ -2
CD44-238	ENST00000534296	LRRC59	Q96AG4	307 aa	Known RBP	2.58	□□□□□ -2
CD44-238	ENST00000534296	RHNO1	Q9BSD3	238 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	TRIM51	Q9BSJ1	452 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	TXLNGY	Q9BZA5	131 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	SEMA6A	Q9H2E6	1030 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	KCNK15	Q9H427	330 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	OPA3	Q9H6K4	179 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	HHATL	Q9HCP6	504 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	PIH1D3	Q9NQM4	214 aa	Known RBP	2.58	□□□□□ -2
CD44-238	ENST00000534296	C2orf42	Q9NWW7	574 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	LARS	Q9P2J5	1176 aa	Known RBP	2.58	□□□□□ -2
CD44-238	ENST00000534296	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	2.58	□□□□□ -2
CD44-238	ENST00000534296	ANAPC5	Q9UJX4	755 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	SLC7A7	Q9UM01	511 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	B3GALT5	Q9Y2C3	310 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	TRPV2	Q9Y5S1	764 aa		2.58	□□□□□ -2
CD44-238	ENST00000534296	GPR75-ASB3	A0A0A6YYF3	556 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TRBC2	A0A5B9	178 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	OR2M5	A3KFT3	312 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	MAGEB17	A8MXT2	336 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PLK4	O00444	970 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	MEIS2	O14770	477 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TRUB2	O95900	331 aa	Known RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	CLPTM1	O96005	669 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	FYN	P06241	537 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	CCDC175	P0C221	793 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ERVK-10	P10266	1014 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	SELL	P14151	372 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	MYL6B	P14649	208 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	LIF	P15018	202 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PFKFB1	P16118	471 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	NR1D1	P20393	614 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	CBL	P22681	906 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	EPHA2	P29317	976 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PCGF2	P35227	344 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	SLC9A3	P48764	834 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	GRAP	Q13588	217 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	SNTB1	Q13884	538 aa	Known RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	TNIP1	Q15025	636 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	FCN2	Q15485	313 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	KIAA1644	Q3SXP7	199 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	GTDC1	Q4AE62	458 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	RAB6C	Q53S08	254 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TCP11X2	Q5H9J9	407 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ARMC4	Q5T2S8	1044 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	GCNT6	Q5T4J0	391 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	C6orf163	Q5TEZ5	329 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ARHGEF16	Q5VV41	709 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ZNF772	Q68DY9	489 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	ARHGAP17	Q68EM7	881 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	FAM109B	Q6ICB4	259 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	STXBP4	Q6ZWJ1	553 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ZNF534	Q76KX8	674 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	DET1	Q7L5Y6	550 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	CHST3	Q7LGC8	479 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	LDB1	Q86U70	411 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	IQCH	Q86VS3	1027 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	LINC00346	Q8IVM7	164 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	APLF	Q8IW19	511 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	SCML4	Q8N228	414 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	L3MBTL4	Q8NA19	623 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	ZNF485	Q8NCK3	441 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	OR2T12	Q8NG77	320 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	EXD1	Q8NHP7	514 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TEKT4	Q8WW24	435 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TMEM143	Q96AN5	459 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	HDAC11	Q96DB2	347 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	RMDN1	Q96DB5	314 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TMCO6	Q96DC7	493 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	FAM81B	Q96LP2	452 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	SFXN2	Q96NB2	322 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	DGAT2	Q96PD7	388 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	MS4A10	Q96PG2	267 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	NEK1	Q96PY6	1258 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	RAB3IP	Q96QF0	476 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	ABHD1	Q96SE0	405 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	LITAF	Q99732	161 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PSD2	Q9BQI7	771 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PITPNM3	Q9BZ71	974 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	RAB6C	Q9H0N0	254 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	CCDC177	Q9NQR7	707 aa	Predicted RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	PAG1	Q9NWQ8	432 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	PTTG2	Q9NZH5	202 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	IL17B	Q9UHF5	180 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	CPSF3	Q9UKF6	684 aa	Known RBP	2.57	□□□□□ -2
CD44-238	ENST00000534296	KCNJ14	Q9UNX9	436 aa		2.57	□□□□□ -2
CD44-238	ENST00000534296	TAF1	P21675	1872 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	EDDM13	A0A1B0GTR0	161 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	TCRBV21S2A2	A0A5A6	115 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ARHGEF37	A1IGU5	675 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ELOVL7	A1L3X0	281 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	OR6C76	A6NM76	312 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	CYSRT1	A8MQ03	144 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	ARHGEF9	O43307	516 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	SYNCRIP	O60506	623 aa	Known RBP	2.56	□□□□□ -2
CD44-238	ENST00000534296	DIAPH2	O60879	1101 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	EML2	O95834	649 aa		2.56	□□□□□ -2
CD44-238	ENST00000534296	TSHB	P01222	138 aa		2.56	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms