RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 LRP8Q14114 963 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ZRSR2Q15696 482 aaKnown RBP11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 SLC1A5Q15758 541 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 DENND2CQ68D51 928 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 CASC4Q6P4E1 433 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 CYB5D1Q6P9G0 228 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 C3orf62Q6ZUJ4 267 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 DPPA4Q7L190 304 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 SYVN1Q86TM6 617 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ZSWIM9Q86XI8 627 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 PELI3Q8N2H9 469 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 CT55Q8WUE5 264 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ZBTB9Q96C00 473 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 CFAP36Q96G28 342 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ZIM3Q96PE6 472 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 OR2M4Q96R27 311 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 OR6C1Q96RD1 312 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ATP13A3Q9H7F0 1226 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 VIPAS39Q9H9C1 493 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 VPS37BQ9H9H4 285 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ARNT2Q9HBZ2 717 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ASF1BQ9NVP2 202 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 SYBUQ9NX95 663 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 ZC3H7BQ9UGR2 993 aaKnown RBP11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 CHKBQ9Y259 395 aa11.08□□□□□ -0.64
TRAPPC4-213ENST00000533149 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 MAGEB16A2A368 324 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 NDST3O95803 873 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 PRLP01236 227 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 FGF5P12034 268 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 TEAD1P28347 426 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 PTPN4P29074 926 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 SSTR1P30872 391 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 POLD2P49005 469 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 RPS15P62841 145 aaKnown RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 TRAF2Q12933 501 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 NFATC2Q13469 925 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 SIRPB2Q5JXA9 342 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 CAPN12Q6ZSI9 719 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 CISD2Q8N5K1 135 aaKnown RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 RBMXL3Q8N7X1 1067 aaKnown RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 AVL9Q8NBF6 648 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 OR2W6PQ8NHA6 318 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 SCARF2Q96GP6 870 aaPredicted RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 LURAP1Q96LR2 239 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 COQ10AQ96MF6 247 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 TRIB3Q96RU7 358 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 IL22Q9GZX6 179 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 ITGB1BP2Q9UKP3 347 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 NFS1Q9Y697 457 aa11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 MN1Q10571 1320 aaPredicted RBP11.07□□□□□ -0.64
TRAPPC4-213ENST00000533149 A0A087WUV0 522 aaPredicted RBP11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 A8MX80 341 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PRSS44E7EML9 344 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 SPAG6O75602 509 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 SHBGP04278 402 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PDHA1P08559 390 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 GSTA2P09210 222 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 NUDT17P0C025 328 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 HLA-DPA1P20036 260 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 ADRA1DP25100 572 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 BCL2L1Q07817 233 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 MSLNQ13421 630 aaPredicted RBP11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PCID2Q5JVF3 399 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 LRIG3Q6UXM1 1119 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 UNC5AQ6ZN44 842 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 GDF7Q7Z4P5 450 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 SLC9B2Q86UD5 537 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PPP1R3BQ86XI6 285 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 FDCSPQ8NFU4 85 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PTCD2Q8WV60 388 aaKnown RBP11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 ECHDC3Q96DC8 303 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 RNF31Q96EP0 1072 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 ELMO2Q96JJ3 720 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 RANBP9Q96S59 729 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 CCDC77Q9BR77 488 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 TRIM56Q9BRZ2 755 aaKnown RBP11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 NAT9Q9BTE0 207 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 TDRD1Q9BXT4 1180 aaKnown RBP11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PLAC1Q9HBJ0 212 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 SAMD15Q9P1V8 674 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 PLEKHM1Q9Y4G2 1056 aa11.06□□□□□ -0.64
TRAPPC4-213ENST00000533149 SETD2Q9BYW2 2564 aaPredicted RBP11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 AGPSO00116 658 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 LRRTM2O43300 516 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 FZD6O60353 706 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 PGLSO95336 258 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 C9P02748 559 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 ABHD2P08910 425 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 SLC2A4P14672 509 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 PGAM1P18669 254 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 LPOP22079 712 aaPredicted RBP11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 CA4P22748 312 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 PHBP35232 272 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 PTGER4P35408 488 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 IFFO1Q0D2I5 559 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 GALNT3Q14435 633 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 POU6F1Q14863 301 aa11.05□□□□□ -0.64
TRAPPC4-213ENST00000533149 QPCTQ16769 361 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms