RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CRHR2Q13324 411 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 LAPTM5Q13571 262 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 SLC9A5Q14940 896 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 ZNF792Q3KQV3 632 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3GQ6DHY5 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3CQ6IPX1 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 GPRIN1Q7Z2K8 1008 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 ZNF598Q86UK7 904 aaKnown RBP12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3Q8IZP1 549 aaPredicted RBP12.46□□□□□ -0.42
USP53-209ENST00000514665 ZNF366Q8N895 744 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 MAT2BQ9NZL9 334 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 POLR1DQ9Y2S0 133 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 PCDHGA11Q9Y5H2 935 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 MEIS3P2A8K0S8 358 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 HAS3O00219 553 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 IDH3BO43837 385 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 OPN1SWP03999 348 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 EPHX1P07099 455 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ENO2P09104 434 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 AMD1P17707 334 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SNX20Q7Z614 316 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 TMEM199Q8N511 208 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 OR4F6Q8NGB9 312 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PAAF1Q9BRP4 392 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 COPS4Q9BT78 406 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CCDC106Q9BWC9 280 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 OSER1Q9NX31 292 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 TLL2Q9Y6L7 1015 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 A0A1W2PP18 115 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 A0A1W2PRU2 124 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FADS2P1A8MWK0 482 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SDHDO14521 159 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PLOD3O60568 738 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 OR6A2O95222 327 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CLDN7O95471 211 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 HLA-DQA2P01906 255 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 LAG3P18627 525 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PSMA1P25786 263 aaKnown RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 AGTR2P50052 363 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 STC1P52823 247 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PLA2G16P53816 162 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 TNFAIP8L2Q6P589 184 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 CHST15Q7LFX5 561 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 SLC43A3Q8NBI5 491 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ADAMTS15Q8TE58 950 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PLD4Q96BZ4 506 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 COX4I2Q96KJ9 171 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 DUSP26Q9BV47 211 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 RUVBL1Q9Y265 456 aaKnown RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 PRKAB1Q9Y478 270 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ZNF780BQ9Y6R6 833 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 C10orf71Q711Q0 1435 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 A0A0D9SEW6 157 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ZW10O43264 779 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 NDUFB5O43674 189 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FYNP06241 537 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 C8AP07357 584 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 HAPLN1P10915 354 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 FUT4P22083 530 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PRKACGP22612 351 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 VARSP26640 1264 aaKnown RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 QPRTQ15274 297 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SPANXN4Q5MJ08 99 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FAM46CQ5VWP2 391 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 OR4F3Q6IEY1 312 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ZNF544Q6NX49 715 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 XKR5Q6UX68 686 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 PHYKPLQ8IUZ5 450 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ZZZ3Q8IYH5 903 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FBXO27Q8NI29 283 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 NSUN5Q96P11 429 aaKnown RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 HEPHQ9BQS7 1158 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CLEC4MQ9H2X3 399 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 CD320Q9NPF0 282 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CCDC177Q9NQR7 707 aaPredicted RBP12.45□□□□□ -0.42
USP53-209ENST00000514665 PDLIM7Q9NR12 457 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SLC22A14Q9Y267 594 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 TOPAZ1Q8N9V7 1692 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 MYO7AQ13402 2215 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ILVBLA1L0T0 632 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 J3QRK9 145 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ADAMDEC1O15204 470 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 TLL1O43897 1013 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SLC35E2BP0CK96 405 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CEACAM7Q14002 265 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 LAPTM4AQ15012 233 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FAM131AQ6UXB0 335 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 RNF19BQ6ZMZ0 732 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 COMMD2Q86X83 199 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FAM110BQ8TC76 370 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 SLC9A6Q92581 669 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FBXL8Q96CD0 374 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 FBXL20Q96IG2 436 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 ACTR3BQ9P1U1 418 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 GULP1Q9UBP9 304 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 CLEC4AQ9UMR7 237 aa12.45□□□□□ -0.42
USP53-209ENST00000514665 NUP188Q5SRE5 1749 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 CICQ96RK0 1608 aaPredicted RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 LRRC14BA6NHZ5 514 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 LOC730098B7Z3J9 87 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms