RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SYTL2Q9HCH5 934 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 COLEC10Q9Y6Z7 277 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 SNRPAP09012 282 aaKnown RBP28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 NDUFS1P28331 727 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 CRABP2P29373 138 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 LGSNQ5TDP6 509 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 TDRPQ86YL5 185 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 NKAPQ8N5F7 415 aaKnown RBP28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 KIR3DX1Q9H7L2 352 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 ARGLU1Q9NWB6 273 aaPredicted RBP28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 ANKRD12Q6UB98 2062 aa28.85■■■□□ 2.21
LIMCH1-211ENST00000509638 IQANK1A0A1B0GTG1 560 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 CDH16O75309 829 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 RPN2P04844 631 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 GMPRP36959 345 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 BDKRB1P46663 353 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 TMEM26Q6ZUK4 368 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 GLRX5Q86SX6 157 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 DCUN1D3Q8IWE4 304 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 RBM12BQ8IXT5 1001 aaKnown RBP28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 TBC1D21Q8IYX1 336 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 ISL2Q96A47 359 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 SH3KBP1Q96B97 665 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 MTBPQ96DY7 904 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 SLC38A3Q99624 504 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 H2AFXP16104 143 aaPredicted RBP28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 SDHBP21912 280 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 TYK2P29597 1187 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 CSRP3P50461 194 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 NOVA1P51513 510 aaKnown RBP28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 PRKG2Q13237 762 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 TAF1BQ53T94 588 aaPredicted RBP28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 CYHR1Q6ZMK1 362 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 EURLQ9NYK6 297 aa28.84■■■□□ 2.21
LIMCH1-211ENST00000509638 RASGRF2O14827 1237 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 PSIP1O75475 530 aaKnown RBP28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 MAGEA12P43365 314 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 NR1D2Q14995 579 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 PLCL1Q15111 1095 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 FBXO38Q6PIJ6 1188 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 JPH3Q8WXH2 748 aaPredicted RBP28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 CCDC3Q9BQI4 270 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 RTKNQ9BST9 563 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 UCK1Q9HA47 277 aa28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 TDRKHQ9Y2W6 561 aaKnown RBP28.83■■■□□ 2.21
LIMCH1-211ENST00000509638 LILRA5A6NI73 299 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 ARHGEF33A8MVX0 844 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 C1orf105O95561 183 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 CCDC166P0CW27 439 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 PNLIPP16233 465 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 MAPK9P45984 424 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 RASA2Q15283 850 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 CCDC157Q569K6 752 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 SPRED1Q7Z699 444 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 TBC1D1Q86TI0 1168 aaPredicted RBP28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 Q8N9G6 341 aaPredicted RBP28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 ASB11Q8WXH4 323 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 LDHAL6BQ9BYZ2 381 aaPredicted RBP28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 TOR4AQ9NXH8 423 aa28.82■■■□□ 2.2
LIMCH1-211ENST00000509638 UQCRHLA0A096LP55 91 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 A0A096LPK6 155 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 SPAARA0A1B0GVQ0 90 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 TLDC2A0PJX2 215 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 GIPC1O14908 333 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 CATP04040 527 aaKnown RBP28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 C2P06681 752 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 GP1BAP07359 652 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 UQCRHP07919 91 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 CEACAM1P13688 526 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 ALDH4A1P30038 563 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 GPR3P46089 330 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 IRF9Q00978 393 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 EEF1AKMT2Q5JPI9 291 aaKnown RBP28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 PPM1JQ5JR12 505 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 SPATA6LQ8N4H0 392 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 OR52E1Q8NGJ3 308 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 PDLIM5Q96HC4 596 aaKnown RBP28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 TBC1D10AQ9BXI6 508 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 UNKQ9C0B0 810 aaKnown RBP28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 KCNK4Q9NYG8 393 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 CAMSAP3Q9P1Y5 1249 aaPredicted RBP28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 CIDEBQ9UHD4 219 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 POLG2Q9UHN1 485 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 TLK1Q9UKI8 766 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 ADAMTS6Q9UKP5 1117 aa28.81■■■□□ 2.2
LIMCH1-211ENST00000509638 KRT87PA6NCN2 255 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 CCNFP41002 786 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 OR1D5P58170 312 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 ZNF844Q08AG5 666 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 CSHL1Q14406 222 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 CNPY4Q8N129 248 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 RIBC1Q8N443 379 aaPredicted RBP28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 MZB1Q8WU39 189 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 ZFPM2Q8WW38 1151 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 UBXN10Q96LJ8 280 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 ZIM3Q96PE6 472 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 DERL2Q9GZP9 239 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 VPS11Q9H270 941 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 IKZF3Q9UKT9 509 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 PLAGL1Q9UM63 463 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms