RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 MAXP61244 160 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 VGLL4Q14135 290 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 MAD2L1BPQ15013 274 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 CDK10Q15131 360 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ARMCX6Q7L4S7 300 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 MSRB3Q8IXL7 192 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 SYTL1Q8IYJ3 562 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 AMER2Q8N7J2 671 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 IPCEF1Q8WWN9 437 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 SLC13A3Q8WWT9 602 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 TBC1D20Q96BZ9 403 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 BARD1Q99728 777 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 APOL4Q9BPW4 351 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 NT5MQ9NPB1 228 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ITM2CQ9NQX7 267 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 RNF181Q9P0P0 153 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 AGO1Q9UL18 857 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 NDRG4Q9ULP0 352 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 KCNH4Q9UQ05 1017 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 CAB39Q9Y376 341 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 GMPPBQ9Y5P6 360 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 MYBPHLA2RUH7 354 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 NCF1BA6NI72 391 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 NCF1CA8MVU1 366 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 PGLSO95336 258 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ATXN1LP0C7T5 689 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 NCF1P14598 390 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 HOXB6P17509 224 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 KRT20P35900 424 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 DAPP51397 102 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 DEFA1P59665 94 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 DEFA3P59666 94 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 BRMS1LQ5PSV4 323 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 KDM4DQ6B0I6 523 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 UBQLNLQ8IYU4 475 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 SLC10A4Q96EP9 437 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ZNF382Q96SR6 550 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 C16orf70Q9BSU1 422 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 TBCDQ9BTW9 1192 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 RNF39Q9H2S5 420 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ADARB2Q9NS39 739 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 SLC25A37Q9NYZ2 338 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 TMA7Q9Y2S6 64 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 PCDHGB6Q9Y5F9 930 aa16.78■□□□□ 0.28
SQSTM1-211ENST00000506690 ASB14A6NK59 587 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 PDZK1P1A8MUH7 402 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 EVPLLA8MZ36 301 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 ADM5C9JUS6 153 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 E2F3O00716 465 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 ZW10O43264 779 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 MFN2O95140 757 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 MAGEA2P43356 314 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 STC1P52823 247 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 PTPRCAPQ14761 206 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 SYT16Q17RD7 645 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 RTL3Q8N8U3 475 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 DCBLD1Q8N8Z6 715 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 ASB1Q9Y576 335 aa16.77■□□□□ 0.28
SQSTM1-211ENST00000506690 SERPINF2P08697 491 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 OGNP20774 298 aaKnown RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 IGFBP6P24592 240 aaPredicted RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 S100A5P33763 92 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 RENBPP51606 427 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 OR2B6P58173 313 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 ERVPABLB-1P60509 514 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 RACK1P63244 317 aaKnown RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 DSC2Q02487 901 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 RAD51Q06609 339 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 ITKQ08881 620 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 CCDC58Q4VC31 144 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 UTS2BQ765I0 119 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 TSPYL5Q86VY4 417 aaPredicted RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 SIMC1Q8NDZ2 872 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 OR52B6Q8NGF0 335 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 PEX13Q92968 403 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 FCRL2Q96LA5 508 aaPredicted RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 SYT17Q9BSW7 474 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 RNF6Q9Y252 685 aa16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 POLR3HQ9Y535 204 aaPredicted RBP16.77■□□□□ 0.27
SQSTM1-211ENST00000506690 NPEPPSL1A6NEC2 478 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 M0R082 166 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 SEC22BO75396 215 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CNMDO75829 334 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 MED26O95402 600 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 SERPINA1P01009 418 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 APOA1P02647 267 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 DBTP11182 482 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 ETV6P41212 452 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 GRIK4Q16099 956 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 TYSND1Q2T9J0 566 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CARD16Q5EG05 197 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 NETO1Q8TDF5 533 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 FCGR1BQ92637 280 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 ESAMQ96AP7 390 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 PYURFQ96I23 114 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CDK15Q96Q40 435 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 SH3GL1Q99961 368 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CATSPERZQ9NTU4 200 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CCDC59Q9P031 241 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms