RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZBTB11O95625 1053 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-215ENST00000496447 AGXTP21549 392 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 TBC1D25Q3MII6 688 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 RUNDC3AQ59EK9 446 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 BRAT1Q6PJG6 821 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 SPPL2CQ8IUH8 684 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF366Q8N895 744 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 SLC38A4Q969I6 547 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 FCRL5Q96RD9 977 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 TMEM138Q9NPI0 162 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 FBXL12Q9NXK8 326 aa12.93□□□□□ -0.34
PTPRF-215ENST00000496447 MTHFRP42898 656 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CHRNA4P43681 627 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PCDH1Q08174 1060 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SLC1A5Q15758 541 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SLC34A3Q8N130 599 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CYP2S1Q96SQ9 504 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 MIPEPQ99797 713 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 RIIAD1A6NNX1 92 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PDLIM1O00151 329 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PDPK1O15530 556 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 ALPIP09923 528 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PYDC2Q56P42 97 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PHF19Q5T6S3 580 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 LIN54Q6MZP7 749 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 Q6ZVU0 165 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CYP2U1Q7Z449 544 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 AP3S1Q92572 193 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 RIT1Q92963 219 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 TAMM41Q96BW9 452 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 NEUROD4Q9HD90 331 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SLC35C2Q9NQQ7 365 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CDC14AQ9UNH5 594 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 INSL5Q9Y5Q6 135 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 NID2Q14112 1375 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 NOTOA8MTQ0 251 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 UGT2B11O75310 529 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 IST1P53990 364 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 DCST1Q5T197 706 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 TMPRSS11AQ6ZMR5 421 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SLCO6A1Q86UG4 719 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 HCAR2Q8TDS4 363 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 POF1BQ8WVV4 589 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SLC35G5Q96KT7 338 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 ZSCAN5AQ9BUG6 496 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CCDC162PA2VCL2 907 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 TNFRSF11BO00300 401 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 PPEF2O14830 753 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CHRNA1P02708 482 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 HLA-DQB2P05538 268 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 UNGP13051 313 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-215ENST00000496447 HOXB2P14652 356 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 CASRP41180 1078 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 FAM46DQ8NEK8 389 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 TTLQ8NG68 377 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 OR2AP1Q8NGE2 309 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 OR13C4Q8NGS5 318 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 SMPDL3BQ92485 455 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF516Q92618 1163 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 IRF7Q92985 503 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 ZNF570Q96NI8 536 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 OSBPL2Q9H1P3 480 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 ZDHHC3Q9NYG2 299 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 COMMD9Q9P000 198 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 RUVBL1Q9Y265 456 aaKnown RBP12.92□□□□□ -0.34
PTPRF-215ENST00000496447 COQ4Q9Y3A0 265 aa12.92□□□□□ -0.34
PTPRF-215ENST00000496447 STX16-NPEPL1H3BU86 382 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 STX16O14662 325 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 TIPRLO75663 272 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 NADKO95544 446 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 F2P00734 622 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 PENKP01210 267 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 FAM163BP0C2L3 166 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 MSX2P35548 267 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CAPGP40121 348 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CCR8P51685 355 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 RPL26P61254 145 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 CAMK1Q14012 370 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 UAP1L1Q3KQV9 507 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 MTX3Q5HYI7 312 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ANO7Q6IWH7 933 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GALNT5Q7Z7M9 940 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ANKRD46Q86W74 232 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 LRRC57Q8N9N7 239 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 GSTCDQ8NEC7 633 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 SUN3Q8TAQ9 357 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 TMEM109Q9BVC6 243 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 C1orf109Q9NX04 203 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 DNAJB4Q9UDY4 337 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 SCML2Q9UQR0 700 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 RBM47A0AV96 593 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 EME2A4GXA9 379 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 RB1P06400 928 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 KCNQ1P51787 676 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 SLC8B1Q6J4K2 584 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 FAM92BQ6ZTR7 304 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ABHD13Q7L211 337 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ERI1Q8IV48 349 aaKnown RBP12.91□□□□□ -0.34
PTPRF-215ENST00000496447 ESAMQ96AP7 390 aa12.91□□□□□ -0.34
PTPRF-215ENST00000496447 TLCD1Q96CP7 247 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms