RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ASF1AQ9Y294 204 aa12.37□□□□□ -0.43
PTPRF-214ENST00000496043 KCNMB2Q9Y691 235 aa12.37□□□□□ -0.43
PTPRF-214ENST00000496043 HELZ2Q9BYK8 2649 aaKnown RBP12.37□□□□□ -0.43
PTPRF-214ENST00000496043 SLC5A10A0PJK1 596 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CDC14CA4D256 554 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 AP3B1O00203 1094 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 KDM1AO60341 852 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 APRTP07741 180 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CCDC175P0C221 793 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ACADLP28330 430 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 PTPN4P29074 926 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 RPL22P35268 128 aaKnown RBP12.36□□□□□ -0.43
PTPRF-214ENST00000496043 NPY2RP49146 381 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CSRP3P50461 194 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 PRAMEP78395 509 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ACVR1Q04771 509 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 PCID2Q5JVF3 399 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 DRICH1Q6PGQ1 229 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-214ENST00000496043 GSTA5Q7RTV2 222 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ADGRF3Q8IZF5 1079 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CPT1BQ92523 772 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 PEX13Q92968 403 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 MR1Q95460 341 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 LRFN5Q96NI6 719 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 TRAPPC9Q96Q05 1148 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 HGH1Q9BTY7 390 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 TLR10Q9BXR5 811 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CLMPQ9H6B4 373 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF71Q9NQZ8 489 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ACTR10Q9NZ32 417 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 ZKSCAN5Q9Y2L8 839 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 GCN1Q92616 2671 aaKnown RBP12.36□□□□□ -0.43
PTPRF-214ENST00000496043 CFAP46Q8IYW2 2715 aa12.36□□□□□ -0.43
PTPRF-214ENST00000496043 BHMG1C9JSJ3 638 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-214ENST00000496043 MKRN2OSH3BPM6 223 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 PYCARD-AS1I3L0S3 204 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 OR1I1O60431 355 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 FURINP09958 794 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 MSL3P1P0C860 447 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ZSCAN5DPP0CG00 497 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ST6GAL1P15907 406 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 SHMT2P34897 504 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 SIX1Q15475 284 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-214ENST00000496043 SYTL3Q4VX76 610 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 UNC5AQ6ZN44 842 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 LRRC8AQ8IWT6 810 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 GLIS1Q8NBF1 620 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 PPHLN1Q8NEY8 458 aaKnown RBP12.35□□□□□ -0.43
PTPRF-214ENST00000496043 OR5AR1Q8NGP9 310 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 CLIP3Q96DZ5 547 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF778Q96MU6 729 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 NRTNQ99748 197 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 CARD6Q9BX69 1037 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 TSSK1BQ9BXA7 367 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 PITPNM3Q9BZ71 974 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 SLC7A5P2Q9GIP4 190 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ACTL8Q9H568 366 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 CHRAC1Q9NRG0 131 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 HOMER3Q9NSC5 361 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 BFARQ9NZS9 450 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ANAPC2Q9UJX6 822 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 TDRKHQ9Y2W6 561 aaKnown RBP12.35□□□□□ -0.43
PTPRF-214ENST00000496043 TCAF1Q9Y4C2 921 aa12.35□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF106Q9H2Y7 1883 aaKnown RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 TMEM150CB9EJG8 249 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 MEN1O00255 615 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 NRDCO43847 1150 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 CEP104O60308 925 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 FGGP02679 453 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 CYP2A7P20853 494 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 SESN2P58004 480 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 GPS2Q13227 327 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 UGT8Q16880 541 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 LACTB2Q53H82 288 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 AARS2Q5JTZ9 985 aaKnown RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 PLEKHS1Q5SXH7 462 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 IZUMO3Q5VZ72 239 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 SPESP1Q6UW49 350 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 NAPRTQ6XQN6 538 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF517Q6ZMY9 492 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF534Q76KX8 674 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 SYVN1Q86TM6 617 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 SLC38A9Q8NBW4 561 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 TRIM58Q8NG06 486 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 OR1L3Q8NH93 324 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 OR5K2Q8NHB8 316 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 ASZ1Q8WWH4 475 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 THAP4Q8WY91 577 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 N4BP2L2Q92802 583 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 TCTN2Q96GX1 697 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 CHST8Q9H2A9 424 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 EIF2B3Q9NR50 452 aaKnown RBP12.34□□□□□ -0.43
PTPRF-214ENST00000496043 OR6C2Q9NZP2 312 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 ICKQ9UPZ9 632 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 MAN2B2Q9Y2E5 1009 aa12.34□□□□□ -0.43
PTPRF-214ENST00000496043 E7EQ34 232 aa12.33□□□□□ -0.44
PTPRF-214ENST00000496043 CD3EAPO15446 510 aaKnown RBP12.33□□□□□ -0.44
PTPRF-214ENST00000496043 CHRM5P08912 532 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-214ENST00000496043 HBQ1P09105 142 aa12.33□□□□□ -0.44
PTPRF-214ENST00000496043 RAB40ALP0C0E4 278 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms