RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FGF1P05230 155 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 IL6P05231 212 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CHRNB1P11230 501 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 DARSP14868 501 aaKnown RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CTSKP43235 329 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MAGEA11P43364 429 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 HTR3AP46098 478 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 LIMK1P53667 647 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MAD2L1Q13257 205 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SEMA3AQ14563 771 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 FBXO43Q4G163 708 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TOR1AIP1Q5JTV8 583 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ATAD3CQ5T2N8 411 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MARC1Q5VT66 337 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MLIPQ5VWP3 458 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 IL31Q6EBC2 164 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SAMD7Q7Z3H4 446 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 UBQLNLQ8IYU4 475 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CARNMT1Q8N4J0 409 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PNPLA1Q8N8W4 532 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 FAM83FQ8NEG4 500 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 OR4L1Q8NH43 312 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SLC10A4Q96EP9 437 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CAMKK2Q96RR4 588 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CDK5RAP1Q96SZ6 601 aaKnown RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 THUMPD3Q9BV44 507 aaKnown RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CDADC1Q9BWV3 514 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CEP44Q9C0F1 390 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ZBTB20Q9HC78 741 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 NT5MQ9NPB1 228 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ASIC5Q9NY37 505 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TBC1D14Q9P2M4 693 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 IKZF3Q9UKT9 509 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 RNF6Q9Y252 685 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MED16Q9Y2X0 877 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PCDHGB6Q9Y5F9 930 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PPP2R3BQ9Y5P8 575 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MYBPHLA2RUH7 354 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 RRN3P2A6NIE6 340 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 PDZK1P1A8MUH7 402 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 E9PAM4 449 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CCL22O00626 93 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 KRT6AP02538 564 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 KRT6BP04259 564 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 ZNF286BP0CG31 522 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 FPR1P21462 350 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 KRT20P35900 424 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 AGTR2P50052 363 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 GZMMP51124 257 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 DAPP51397 102 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 DGKQP52824 942 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 ERVPABLB-1P60509 514 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 ELP6Q0PNE2 266 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 MFSD10Q14728 455 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 NR6A1Q15406 480 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CARTPTQ16568 116 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 MAPKAPK3Q16644 382 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 KIAA1614Q5VZ46 1190 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 PPP2R2DQ66LE6 453 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 ERAP2Q6P179 960 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 MSANTD2Q6P1R3 559 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 SCIMPQ6UWF3 145 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 TMC5Q6UXY8 1006 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 RNF19BQ6ZMZ0 732 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 SLC46A3Q7Z3Q1 461 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 MSRB3Q8IXL7 192 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 PAF1Q8N7H5 531 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CDYL2Q8N8U2 506 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 TTC29Q8NA56 475 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 GALNT6Q8NCL4 622 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 GRPEL2Q8TAA5 225 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 ARRDC2Q8TBH0 407 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 BRSK1Q8TDC3 778 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 TRIM63Q969Q1 353 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 PYCR2Q96C36 320 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 MED30Q96HR3 178 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 C1orf74Q96LT6 269 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CEP295NLQ96MC4 621 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 C6orf62Q9GZU0 229 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 RIBC2Q9H4K1 309 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 SLA2Q9H6Q3 261 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 AGO3Q9H9G7 860 aaKnown RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 PLCXD1Q9NUJ7 323 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 FBXL12Q9NXK8 326 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 SLC25A37Q9NYZ2 338 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 KLK14Q9P0G3 267 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 GALPQ9UBC7 116 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CRNNQ9UBG3 495 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 UXTQ9UBK9 157 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 SAMD4AQ9UPU9 718 aaKnown RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 INVSQ9Y283 1065 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 TRAPPC4Q9Y296 219 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 VPS9D1Q9Y2B5 631 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 CARD8Q9Y2G2 431 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 WBP11Q9Y2W2 641 aaKnown RBP9.49□□□□□ -0.89
SYNE1-230ENST00000495090 GBF1Q92538 1859 aa9.49□□□□□ -0.89
SYNE1-230ENST00000495090 EP400Q96L91 3159 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 NPEPPSL1A6NEC2 478 aa9.48□□□□□ -0.89
SYNE1-230ENST00000495090 MOXD2PA6NHM9 499 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms