RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ITGA2BP08514 1039 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 CHRM3P20309 590 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ACADLP28330 430 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 CARSP49589 748 aaKnown RBP14.36□□□□□ -0.11
USP4-212ENST00000486549 SEPHS1P49903 392 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 PCBP4P57723 403 aaKnown RBP14.36□□□□□ -0.11
USP4-212ENST00000486549 ABRQ12979 859 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ARMC6Q6NXE6 501 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 CAPN12Q6ZSI9 719 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ARHGAP22Q7Z5H3 698 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ZBED8Q8IZ13 594 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ZNF248Q8NDW4 579 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ZFPM2Q8WW38 1151 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 LRRC39Q96DD0 335 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 CERS2Q96G23 380 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 C9orf72Q96LT7 481 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 LRRC1Q9BTT6 524 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 TRIT1Q9H3H1 467 aaKnown RBP14.36□□□□□ -0.11
USP4-212ENST00000486549 SRMSQ9H3Y6 488 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 XKR8Q9H6D3 395 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 PLAC1Q9HBJ0 212 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 HRASLS2Q9NWW9 162 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 OCIAD1Q9NX40 245 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 PDP2Q9P2J9 529 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 CDYLQ9Y232 598 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 ESYT3A0FGR9 886 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 KPNA5O15131 536 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 GPC4O75487 556 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 HAUS5O94927 633 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 FGF3P11487 239 aaPredicted RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 POLR2CP19387 275 aaPredicted RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 PLTPP55058 493 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 UCNP55089 124 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 ADARP55265 1226 aaKnown RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 TRADDQ15628 312 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 DNTTIP2Q5QJE6 756 aaKnown RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 CACHD1Q5VU97 1274 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 BROXQ5VW32 411 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 TRMT10BQ6PF06 316 aaKnown RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 CNSTQ6PJW8 725 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 TBC1D21Q8IYX1 336 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 ZBTB2Q8N680 514 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 MNS1Q8NEH6 495 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 GABPB2Q8TAK5 448 aaPredicted RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 USP7Q93009 1102 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 ZDHHC12Q96GR4 267 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 NAF1Q96HR8 494 aaKnown RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 SAYSD1Q9NPB0 183 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 WDR70Q9NW82 654 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 GALPQ9UBC7 116 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 CIDEBQ9UHD4 219 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 PLAGL1Q9UM63 463 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 RUVBL2Q9Y230 463 aaKnown RBP14.35□□□□□ -0.11
USP4-212ENST00000486549 ZFHX4Q86UP3 3567 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 ADAMTS20P59510 1910 aa14.35□□□□□ -0.11
USP4-212ENST00000486549 GSAPA4D1B5 854 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CTAGE15A4D2H0 777 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CDRT15L2A8MXV6 281 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 E7ESA3 106 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 PRAMEF10O60809 474 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 SLCO2B1O94956 709 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CTAGE8P0CG41 777 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 SLC5A2P31639 672 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 PRKAA1Q13131 559 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 PLEKHS1Q5SXH7 462 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 STEAP4Q687X5 459 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 ZNF549Q6P9A3 640 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CTAGE6Q86UF2 777 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CCDC25Q86WR0 208 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 SPNS2Q8IVW8 549 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 CTAGE4Q8IX94 777 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 SIDT2Q8NBJ9 832 aaKnown RBP14.34□□□□□ -0.11
USP4-212ENST00000486549 C2CD4AQ8NCU7 369 aaPredicted RBP14.34□□□□□ -0.11
USP4-212ENST00000486549 OR5K2Q8NHB8 316 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 ART4Q93070 314 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 PMEPA1Q969W9 287 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 NDNQ99608 321 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 DPH1Q9BZG8 443 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 RAB33BQ9H082 229 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 TFB2MQ9H5Q4 396 aaKnown RBP14.34□□□□□ -0.11
USP4-212ENST00000486549 EPHA6Q9UF33 1036 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 ICKQ9UPZ9 632 aa14.34□□□□□ -0.11
USP4-212ENST00000486549 DSPP15924 2871 aaKnown RBP14.34□□□□□ -0.11
USP4-212ENST00000486549 BTN3A3O00478 584 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 BTN3A1O00481 513 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 RPN2P04844 631 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 ANKRD34CP0C6C1 535 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 BDKRB1P46663 353 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 CAV1Q03135 178 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 CUL1Q13616 776 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 TUBB2AQ13885 445 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 PRSS42Q7Z5A4 293 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 CLEC14AQ86T13 490 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 AMIGO1Q86WK6 493 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 CNTN4Q8IWV2 1026 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 NOA1Q8NC60 698 aaKnown RBP14.33□□□□□ -0.12
USP4-212ENST00000486549 FBXO25Q8TCJ0 367 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 PYROXD1Q8WU10 500 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 GPR21Q99679 349 aa14.33□□□□□ -0.12
USP4-212ENST00000486549 SLC30A3Q99726 388 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms