RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PTBP2Q9UKA9 531 aaKnown RBP10.84□□□□□ -0.67
HDAC6-228ENST00000486227 RBMX2Q9Y388 322 aaKnown RBP10.84□□□□□ -0.67
HDAC6-228ENST00000486227 A0A1B0GVG6 124 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 H3BN98 237 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 CDC7O00311 574 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 ECI2O75521 394 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 CYP11A1P05108 521 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 GPIP06744 558 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 GM2AP17900 193 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 GKP32189 559 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 RAB14P61106 215 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 TRAP1Q12931 704 aaKnown RBP10.84□□□□□ -0.67
HDAC6-228ENST00000486227 GNA13Q14344 377 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 RFX4Q33E94 735 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 GPR33Q49SQ1 333 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 REP15Q6BDI9 236 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 LUZP2Q86TE4 346 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 PACRGLQ8N7B6 248 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-228ENST00000486227 HMGB4Q8WW32 186 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 ASB9Q96DX5 294 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 VMP1Q96GC9 406 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 CCDC106Q9BWC9 280 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 KLHL3Q9UH77 587 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 DUSP12Q9UNI6 340 aa10.84□□□□□ -0.67
HDAC6-228ENST00000486227 CENPXA8MT69 81 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 M0QZQ0 153 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 FPGTO14772 594 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 NBNO60934 754 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 NUDT14O95848 222 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TRBC1P01850 177 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ALDOAP04075 364 aaKnown RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 IL12AP29459 219 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MAT2AP31153 395 aaKnown RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 KIR3DL1P43629 444 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PGGT1BP53609 377 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PCLAFQ15004 111 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TEAD2Q15562 447 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PITRM1Q5JRX3 1037 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TJAP1Q5JTD0 557 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 GDPD4Q6W3E5 623 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 THAP5Q7Z6K1 395 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TMCO2Q7Z6W1 182 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 HDDC3Q8N4P3 179 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ANKLE1Q8NAG6 615 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 NRG4Q8WWG1 115 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 SIPA1Q96FS4 1042 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MRGPRX2Q96LB1 330 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 CDK15Q96Q40 435 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 GALPQ9UBC7 116 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TRBV23OR9-2A0A075B6M9 112 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ZNF840PA6NDX5 716 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 FFAR2O15552 330 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 CST1P01037 141 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PCCBP05166 539 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ALPPL2P10696 532 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TIE1P35590 1138 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ENTPD1P49961 510 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 BLKP51451 505 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TIMM50Q3ZCQ8 353 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 DCAF4L2Q8NA75 395 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 USP7Q93009 1102 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PYCR2Q96C36 320 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MTERF3Q96E29 417 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 HHIPL1Q96JK4 782 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PKP2Q99959 881 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 DPEP2Q9H4A9 486 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ZNF696Q9H7X3 374 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 EPOP01588 193 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 CPTPQ5TA50 214 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 GLYATQ6IB77 296 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ATG14Q6ZNE5 492 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ZMIZ2Q8NF64 920 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 KBTBD8Q8NFY9 601 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 IMP4Q96G21 291 aaKnown RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MOCS1Q9NZB8 636 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 RPS6KA6Q9UK32 745 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ADAMTS6Q9UKP5 1117 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MRPS33Q9Y291 106 aaKnown RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 A0A0J9YVX5 310 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MT-ND1P03886 318 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 CAPGP40121 348 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 ARPC4P59998 168 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 LDLRAP1Q5SW96 308 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 DPY19L2P1Q6NXN4 242 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.83□□□□□ -0.687e-6■□□□□ 8.4
HDAC6-228ENST00000486227 KRT73Q86Y46 540 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 TOP1MTQ969P6 601 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 PPCDCQ96CD2 204 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 NUAK2Q9H093 628 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 MOV10Q9HCE1 1003 aaKnown RBP10.83□□□□□ -0.68
HDAC6-228ENST00000486227 CCNB1IP1Q9NPC3 277 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 SAGE1Q9NXZ1 904 aa10.83□□□□□ -0.68
HDAC6-228ENST00000486227 SH3PXD2BA1X283 911 aa10.82□□□□□ -0.68
HDAC6-228ENST00000486227 C2orf78A6NCI8 922 aa10.82□□□□□ -0.68
HDAC6-228ENST00000486227 SCAMP1O15126 338 aa10.82□□□□□ -0.68
HDAC6-228ENST00000486227 DENRO43583 198 aaKnown RBP10.82□□□□□ -0.68
HDAC6-228ENST00000486227 GMPRP36959 345 aa10.82□□□□□ -0.68
HDAC6-228ENST00000486227 RPL3P39023 403 aaKnown RBP10.82□□□□□ -0.68
HDAC6-228ENST00000486227 IDH2P48735 452 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms