RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 FLRT3Q9NZU0 649 aa2.79□□□□□ -1.96
VPS50-216ENST00000484954 TUBE1Q9UJT0 475 aa2.79□□□□□ -1.96
VPS50-216ENST00000484954 OSGIN1Q9UJX0 560 aa2.79□□□□□ -1.96
VPS50-216ENST00000484954 ZHX1Q9UKY1 873 aaPredicted RBP2.79□□□□□ -1.96
VPS50-216ENST00000484954 MTUS1Q9ULD2 1270 aa2.79□□□□□ -1.96
VPS50-216ENST00000484954 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.79□□□□□ -1.96
VPS50-216ENST00000484954 IGLV7-46A0A075B6I9 117 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 LNP1A1A4G5 178 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 MSGN1A6NI15 193 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 PRR32B1ATL7 298 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 SLCO1B7G3V0H7 640 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 SSX4O60224 188 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 MITFO75030 526 aaPredicted RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 KHDRBS3O75525 346 aaKnown RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 TNFAIP3P21580 790 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 GATA2P23769 480 aaPredicted RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 MAGEA11P43364 429 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 KRTAP10-8P60410 259 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 CX3CL1P78423 397 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 TMF1P82094 1093 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 CTU2Q2VPK5 515 aaKnown RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 MDH1BQ5I0G3 518 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 SPINK14Q6IE38 97 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 FAM180BQ6P0A1 224 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 PSRC1Q6PGN9 363 aaPredicted RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 CEP57L1Q8IYX8 460 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 ADGRF2Q8IZF7 708 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 TRIML1Q8N9V2 468 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 OR5M8Q8NGP6 311 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 LRRC59Q96AG4 307 aaKnown RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 MOAP1Q96BY2 351 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 FNBP1Q96RU3 617 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 FGFBP2Q9BYJ0 223 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 DPAGT1Q9H3H5 408 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 HRH4Q9H3N8 390 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 MYH16Q9H6N6 1097 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 CHMP1AQ9HD42 196 aaPredicted RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 LARSQ9P2J5 1176 aaKnown RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 LRWD1Q9UFC0 647 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 PLAGL1Q9UM63 463 aa2.78□□□□□ -1.96
VPS50-216ENST00000484954 EXO1Q9UQ84 846 aaKnown RBP2.78□□□□□ -1.96
VPS50-216ENST00000484954 MEX3AA1L020 520 aaKnown RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 HYKKA2RU49 373 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 ZNF195O14628 629 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 PAPSS1O43252 624 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 EPB41L2O43491 1005 aaKnown RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 XRCC3O43542 346 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 OR10H2O60403 315 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 PRKRAO75569 313 aaKnown RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 ZWINTO95229 277 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 ZSCAN5DPP0CG00 497 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 GATA1P15976 413 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 GABRA5P31644 462 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 MFAP4P55083 255 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 TPD52P55327 224 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 CXCL9Q07325 125 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 GRAPQ13588 217 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 KRT33BQ14525 404 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 ZNF239Q16600 458 aaKnown RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 XKR3Q5GH77 459 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 CCDC70Q6NSX1 233 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 FAAP20Q6NZ36 180 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 DOK6Q6PKX4 331 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 FIGLAQ6QHK4 219 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 Q6ZRP5 223 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 PTAR1Q7Z6K3 402 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 TBC1D1Q86TI0 1168 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 LACC1Q8IV20 430 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 MCEMP1Q8IX19 187 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 SPAG16Q8N0X2 631 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 LYG1Q8N1E2 194 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 MAGED4Q96JG8 741 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 SYT15Q9BQS2 421 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 P2RY12Q9H244 342 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 ZNF701Q9NV72 531 aaPredicted RBP2.77□□□□□ -1.97
VPS50-216ENST00000484954 HACL1Q9UJ83 578 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 ANGPTL3Q9Y5C1 460 aa2.77□□□□□ -1.97
VPS50-216ENST00000484954 A0A1W2PN81 502 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 FEZF1A0PJY2 475 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 PTGES3LE9PB15 166 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 CHRNA7P36544 502 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 NOVP48745 357 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 DRP2Q13474 957 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 TEAD2Q15562 447 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 SLC25A53Q5H9E4 307 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 TCTEX1D4Q5JR98 221 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 SPDYCQ5MJ68 293 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 LCE3EQ5T5B0 92 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 TEX38Q6PEX7 206 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 LDB1Q86U70 411 aaPredicted RBP2.76□□□□□ -1.97
VPS50-216ENST00000484954 TMEM139Q8IV31 216 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 ARHGAP24Q8N264 748 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 ZNRF4Q8WWF5 429 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 SUSD6Q92537 303 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 AZIN2Q96A70 460 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 CENPTQ96BT3 561 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 ZNF300Q96RE9 604 aaPredicted RBP2.76□□□□□ -1.97
VPS50-216ENST00000484954 OLFM1Q99784 485 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 PIGQQ9BRB3 760 aa2.76□□□□□ -1.97
VPS50-216ENST00000484954 FNDC11Q9BVV2 318 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms