RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SSR2P43308 183 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 OR2T5Q6IEZ7 315 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 VSTM1Q6UX27 236 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 OR2T29Q8NH02 315 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 MTFMTQ96DP5 389 aaKnown RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 TAAR1Q96RJ0 339 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 COQ10BQ9H8M1 238 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF69Q9UC07 566 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CCRL2O00421 344 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CLDN4O14493 209 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PRKAG1P54619 331 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SH3PXD2AQ5TCZ1 1133 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SLC6A16Q9GZN6 736 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PRDM12Q9H4Q4 367 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SLC17A7Q9P2U7 560 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 RBMX2Q9Y388 322 aaKnown RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 NDST3O95803 873 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CLUP10909 449 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 GRK5P34947 590 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CDKN2BP42772 138 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PTGER3P43115 390 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 NFIXQ14938 502 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 MON1AQ86VX9 555 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SLC13A3Q8WWT9 602 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 FLRT1Q9NZU1 646 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 BORCS7-ASMTA0A0B4J1R7 106 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 B4GALT4O60513 344 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 HCN1O60741 890 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 RENP00797 406 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 DDX6P26196 483 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 TSPAN33Q86UF1 283 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SEC14L1Q92503 715 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CEP295NLQ96MC4 621 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 MRI1Q9BV20 369 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PBDC1Q9BVG4 233 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 IKZF2Q9UKS7 526 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PLD2O14939 933 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ADH6P28332 368 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 NADK2Q4G0N4 442 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 RNASEH2BQ5TBB1 312 aaKnown RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SLC22A10Q63ZE4 541 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 C10orf82Q8WW14 230 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SLC39A1Q9NY26 324 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 GNAO1P09471 354 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ATP5A1P25705 553 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PSEN2P49810 448 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 XKP51811 444 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DSG2Q14126 1118 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DCDC5Q6ZRR9 648 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GK5Q6ZS86 529 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GPR65Q8IYL9 337 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 AVL9Q8NBF6 648 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 OR10H4Q8NGA5 316 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ART5Q96L15 291 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TMEM209Q96SK2 561 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GRK6P43250 576 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PTPN9P43378 593 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 MRPS5P82675 430 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PHYKPLQ8IUZ5 450 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 STON2Q8WXE9 905 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 SLA2Q9H6Q3 261 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TECPR2O15040 1411 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 RIC1Q4ADV7 1423 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PMM2O15305 246 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 CPNE3O75131 537 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 HECTD2Q5U5R9 776 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DUS1LQ6P1R4 473 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 FIP1L1Q6UN15 594 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 NUP54Q7Z3B4 507 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 CXorf40BQ96DE9 158 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 BTBD1Q9H0C5 482 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 SLC25A51Q9H1U9 297 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 AGO1Q9UL18 857 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 N6AMT1Q9Y5N5 214 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 U3KQV3 271 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 CACNB4O00305 520 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 NTSR2O95665 410 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PROZP22891 400 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 COL28A1Q2UY09 1125 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 IDNKQ5T6J7 187 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DET1Q7L5Y6 550 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PLPPR4Q7Z2D5 763 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PLEKHH3Q7Z736 793 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TRUB1Q8WWH5 349 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 FAM163AQ96GL9 167 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 MRIQ9BWK5 157 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 POLR2J3Q9H1A7 115 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TAS2R3Q9NYW6 316 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 CMAHPQ9Y471 501 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DOCK9Q9BZ29 2069 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 LOC100130705A0A1B0GUX0 176 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 LYPLA2O95372 231 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 IFNA2P01563 188 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ACVR2AP27037 513 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 SEC23BQ15437 767 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GALNT7Q86SF2 657 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ILDR1Q86SU0 546 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 OTUB2Q96DC9 234 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ATG4CQ96DT6 458 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 PNPOQ9NVS9 261 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms