RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SLC7A9P82251 487 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MAP7Q14244 749 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CPSF6Q16630 551 aaKnown RBP eCLIP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 IMPG1Q17R60 797 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 OTUD3Q5T2D3 398 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MPP7Q5T2T1 576 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 AP1ARQ63HQ0 302 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SUSD1Q6UWL2 747 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 DNAJC14Q6Y2X3 702 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 TPRG1Q6ZUI0 275 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 DET1Q7L5Y6 550 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 TRIM46Q7Z4K8 759 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 TMC8Q8IU68 726 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 RIMKLAQ8IXN7 391 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 BPIFB1Q8TDL5 484 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 GTF2H4Q92759 462 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 ULK4Q96C45 1275 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 LYSMD1Q96S90 227 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 DPY30Q9C005 99 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SUV39H2Q9H5I1 410 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 NTN4Q9HB63 628 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 ARL15Q9NXU5 204 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CD84Q9UIB8 345 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MAGEL2Q9UJ55 1249 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 OGDHLQ9ULD0 1010 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SLC28A1O00337 649 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 IFRD1O00458 451 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CLOCKO15516 846 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LILRB3O75022 631 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 EBLN1P0CF75 366 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 GGT1P19440 569 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 HSPA14Q0VDF9 509 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 RBBP5Q15291 538 aaKnown RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CRY1Q16526 586 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 MAPKAPK3Q16644 382 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TTLL9Q3SXZ7 439 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CYBRD1Q53TN4 286 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ASTLQ6HA08 431 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TMEM214Q6NUQ4 689 aaKnown RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 PRR23BQ6ZRT6 265 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 DHRSXQ8N5I4 330 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 FAM86B1Q8N7N1 296 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 OR10A6Q8NH74 314 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ITFG1Q8TB96 612 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 HM13Q8TCT9 377 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 UBTD2Q8WUN7 234 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 MYLIPQ8WY64 445 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 FIG4Q92562 907 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LMLNQ96KR4 655 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ZBTB18Q99592 522 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 COPS8Q99627 209 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 C19orf43Q9BQ61 176 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 THUMPD3Q9BV44 507 aaKnown RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SLC46A2Q9BY10 475 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ZDHHC6Q9H6R6 413 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CARS2Q9HA77 564 aaKnown RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 RDH14Q9HBH5 336 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LRTM1Q9HBL6 345 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 KCTD5Q9NXV2 234 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SMPD3Q9NY59 655 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ZDHHC3Q9NYG2 299 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SLC25A37Q9NYZ2 338 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TRPS1Q9UHF7 1281 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SLCO3A1Q9UIG8 710 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 PDE10AQ9Y233 779 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CCL26Q9Y258 94 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 FADS3Q9Y5Q0 445 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 MAGED1Q9Y5V3 778 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LRG1P02750 347 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 UGT2B4P06133 528 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 PGRP06401 933 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ANXA6P08133 673 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ANXA5P08758 320 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 CDH1P12830 882 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LAG3P18627 525 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 AKT1P31749 480 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TUBA4AP68366 448 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 GTDC1Q4AE62 458 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 C22orf39Q6P5X5 142 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 DPY19L3Q6ZPD9 716 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 VRK3Q8IV63 474 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 MSRB3Q8IXL7 192 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 OR2T12Q8NG77 320 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 OR8J3Q8NGG0 315 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 OSCP1Q8WVF1 389 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SKA2Q8WVK7 121 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 USP7Q93009 1102 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ECHDC3Q96DC8 303 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TBCDQ9BTW9 1192 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 BDH2Q9BUT1 245 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ACTR8Q9H981 624 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 LIN28AQ9H9Z2 209 aaKnown RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 SLC6A13Q9NSD5 602 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ETAA1Q9NY74 926 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF639Q9UID6 485 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TMPRSS11EQ9UL52 423 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 ATP11BQ9Y2G3 1177 aa8.75□□□□□ -1.01
SYNE1-217ENST00000466159 TRAV19A0A0A6YYK7 116 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 UPK1AO00322 258 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms