RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 MAPK10P53779 464 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 CDKN2DP55273 166 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 MGAT5Q09328 741 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 CBLBQ13191 982 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 RTP5Q14D33 572 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 PLEKHS1Q5SXH7 462 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 WDR74Q6RFH5 385 aaPredicted RBP11.34□□□□□ -0.59
CUX1-207ENST00000465461 C3orf62Q6ZUJ4 267 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 LMNTD2Q8IXW0 634 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 C2orf73Q8N5S3 287 aaPredicted RBP11.34□□□□□ -0.59
CUX1-207ENST00000465461 GPATCH11Q8N954 259 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 LCN9Q8WX39 176 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 LIN37Q96GY3 246 aaPredicted RBP11.34□□□□□ -0.59
CUX1-207ENST00000465461 IL17FQ96PD4 163 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 STRADBQ9C0K7 418 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 CCDC68Q9H2F9 335 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 SRMSQ9H3Y6 488 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 CCDC86Q9H6F5 360 aaKnown RBP11.34□□□□□ -0.59
CUX1-207ENST00000465461 MVB12BQ9H7P6 319 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 POLR1BQ9H9Y6 1135 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 LRRC4CQ9HCJ2 640 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 FAM114A2Q9NRY5 505 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 HRASLS2Q9NWW9 162 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 ICKQ9UPZ9 632 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 VPS9D1Q9Y2B5 631 aa11.34□□□□□ -0.59
CUX1-207ENST00000465461 TCRBV9S1A1TA0A576 114 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 OR5K3A6NET4 321 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 H3BMM5 538 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 BTN3A1O00481 513 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 PLD2O14939 933 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 RASSF9O75901 435 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 C9P02748 559 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 FGF3P11487 239 aaPredicted RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 SAT1P21673 171 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 NDUFS1P28331 727 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 ECHS1P30084 290 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 CAPZBP47756 277 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 LSSP48449 732 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 PLOD1Q02809 727 aaPredicted RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 GBX1Q14549 363 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 EFTUD2Q15029 972 aaKnown RBP eCLIP11.33□□□□□ -0.6
CUX1-207ENST00000465461 CLPPQ16740 277 aaPredicted RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 KLHL38Q2WGJ6 581 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 GLE1Q53GS7 698 aaKnown RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 CACHD1Q5VU97 1274 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 STRA8Q7Z7C7 330 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 PLXDC1Q8IUK5 500 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 CPNE9Q8IYJ1 553 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 TBC1D21Q8IYX1 336 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 OR5K2Q8NHB8 316 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 WDR36Q8NI36 951 aaKnown RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 CD200R1Q8TD46 325 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 PMEPA1Q969W9 287 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 NXPE2Q96DL1 559 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 MAP3K3Q99759 626 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 TRIT1Q9H3H1 467 aaKnown RBP11.33□□□□□ -0.6
CUX1-207ENST00000465461 LATS2Q9NRM7 1088 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 ZFATQ9P243 1243 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 PDP2Q9P2J9 529 aa11.33□□□□□ -0.6
CUX1-207ENST00000465461 GSAPA4D1B5 854 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 EFCAB7A8K855 629 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 KPNA5O15131 536 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 TLX3O43711 291 aaPredicted RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 ZNF500O60304 480 aaPredicted RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 FAM155BO75949 473 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 C1orf105O95561 183 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 JMJD7P0C870 316 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 MCM3P25205 808 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 KPNA2P52292 529 aaKnown RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 SH3BP2P78314 561 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 FRG1Q14331 258 aaKnown RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 GRB7Q14451 532 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 KYNUQ16719 465 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 HECTD2Q5U5R9 776 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 PAQR3Q6TCH7 311 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 KIAA0408Q6ZU52 694 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 PIWIL4Q7Z3Z4 852 aaKnown RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 ARHGAP22Q7Z5H3 698 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 TAX1BP1Q86VP1 789 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 AMIGO1Q86WK6 493 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 OOSP2Q86WS3 158 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 FAM129CQ86XR2 697 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 FAM20CQ8IXL6 584 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 ADGRF3Q8IZF5 1079 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 FBF1Q8TES7 1133 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 ZFPM2Q8WW38 1151 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 ZCCHC14Q8WYQ9 949 aaKnown RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 KCNJ9Q92806 393 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 INPP5DQ92835 1189 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 USP7Q93009 1102 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 SLC46A1Q96NT5 459 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 OLFM1Q99784 485 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 CMKLR1Q99788 373 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 CTRCQ99895 268 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 DPYSL5Q9BPU6 564 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 KLHL25Q9H0H3 589 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 EPB41L1Q9H4G0 881 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 TFB2MQ9H5Q4 396 aaKnown RBP11.32□□□□□ -0.6
CUX1-207ENST00000465461 L2HGDHQ9H9P8 463 aa11.32□□□□□ -0.6
CUX1-207ENST00000465461 SPHK1Q9NYA1 384 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms