RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 LRRC70Q7Z2Q7 622 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TRAM1L1Q8N609 369 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 OR2T12Q8NG77 320 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PNPT1Q8TCS8 783 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SPPL3Q8TCT6 385 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 BRINP2Q9C0B6 783 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 LRRC37AA6NMS7 1700 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CAPN8A6NHC0 703 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ZCCHC18P0CG32 403 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MAGEA10P43363 369 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TRPC1P48995 793 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CST6Q15828 149 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TMEM240Q5SV17 173 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 HEATR4Q86WZ0 1026 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PLD3Q8IV08 490 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SLC43A3Q8NBI5 491 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RBM15BQ8NDT2 890 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 HM13Q8TCT9 377 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 EBF4Q9BQW3 602 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 EFCAB11Q9BUY7 163 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RIBC2Q9H4K1 309 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RNPEPL1Q9HAU8 725 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 EQTNQ9NQ60 294 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MOCS1Q9NZB8 636 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PPM1HQ9ULR3 514 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DHRS7Q9Y394 339 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 STON1Q9Y6Q2 735 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CLOCKO15516 846 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SERPINB7O75635 380 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ENO2P09104 434 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 UQCRBP14927 111 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ALDH4A1P30038 563 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 HMGCLP35914 325 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 GDF5P43026 501 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 GUCA1AP43080 201 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CLK1P49759 484 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ARSDP51689 593 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PLD6Q8N2A8 252 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TMEM145Q8NBT3 493 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 NAT14Q8WUY8 206 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 KLHDC7BQ96G42 594 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ENOPH1Q9UHY7 261 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 A0A1W2PQU0 124 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PDE9AO76083 593 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 UMPSP11172 480 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ACRV1P26436 265 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ADSLP30566 484 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RPS14P62263 151 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TNK2Q07912 1038 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 HEPACAMQ14CZ8 416 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PTCHD3Q3KNS1 767 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SLC9B1Q4ZJI4 515 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MPP7Q5T2T1 576 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PSAPL1Q6NUJ1 521 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CASP12Q6UXS9 341 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RANBP10Q6VN20 620 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 RALGPS2Q86X27 583 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ARHGAP12Q8IWW6 846 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 FBXW8Q8N3Y1 598 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SMPDL3AQ92484 453 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 VMP1Q96GC9 406 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF607Q96SK3 696 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 BATF3Q9NR55 127 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SLC2A4RGQ9NR83 387 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DDX18Q9NVP1 670 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MARCH4Q9P2E8 410 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TAC3Q9UHF0 121 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DUSP12Q9UNI6 340 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TRIM43BA6NCK2 446 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 KRT87PA6NCN2 255 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CLDN4O14493 209 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 GSC2O15499 205 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 S1PR4O95977 384 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF37AP17032 561 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 NT5EP21589 574 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TGFBIQ15582 683 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TCEAL5Q5H9L2 206 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF648Q5T619 568 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 ARMC3Q5W041 872 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 THOC6Q86W42 341 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TRIM69Q86WT6 500 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CYP4Z2PQ8N1L4 340 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DHRSXQ8N5I4 330 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 TRIM43Q96BQ3 446 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 LRMDAQ9H2I8 198 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MTG2Q9H4K7 406 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 POPDC3Q9HBV1 291 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DHRS12A0PJE2 317 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 IGLON5A6NGN9 336 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 RFXAPO00287 272 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 SAP18O00422 153 aaKnown RBP7.25□□□□□ -1.25
SYNE1-213ENST00000448038 SMAD6O43541 496 aaKnown RBP7.25□□□□□ -1.25
SYNE1-213ENST00000448038 RNGTTO60942 597 aaKnown RBP7.25□□□□□ -1.25
SYNE1-213ENST00000448038 RFPL1O75677 317 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 KRT36O76013 467 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 IGFBP6P24592 240 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-213ENST00000448038 HMGCS1Q01581 520 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 NRF1Q16656 503 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 MINDY4Q4G0A6 757 aa7.25□□□□□ -1.25
SYNE1-213ENST00000448038 PLEKHS1Q5SXH7 462 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms